Strain Fitness in Sinorhizobium meliloti 1021 around SMc00551

Experiment: Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00550 and SMc00551 are separated by 106 nucleotidesSMc00551 and SMc00552 are separated by 9 nucleotides SMc00550: SMc00550 - ABC transporter ATP-binding protein, at 1,218,739 to 1,220,622 SMc00550 SMc00551: SMc00551 - phosphatidylserine decarboxylase, at 1,220,729 to 1,221,427 SMc00551 SMc00552: SMc00552 - CDP-diacylglycerol--serine O-phosphatidyltransferase transmembrane protein, at 1,221,437 to 1,222,306 SMc00552 Position (kb) 1220 1221 1222Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1219.746 kb on + strand, within SMc00550at 1219.746 kb on + strand, within SMc00550at 1219.746 kb on + strand, within SMc00550at 1219.747 kb on - strand, within SMc00550at 1219.747 kb on - strand, within SMc00550at 1219.747 kb on - strand, within SMc00550at 1219.747 kb on - strand, within SMc00550at 1219.747 kb on - strand, within SMc00550at 1219.976 kb on - strand, within SMc00550at 1220.101 kb on + strand, within SMc00550at 1220.101 kb on + strand, within SMc00550at 1220.102 kb on - strand, within SMc00550at 1220.490 kb on + strandat 1220.491 kb on - strandat 1220.509 kb on + strandat 1222.370 kb on - strandat 1222.370 kb on - strandat 1222.370 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM
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1,219,746 + SMc00550 0.53 -1.4
1,219,746 + SMc00550 0.53 +0.1
1,219,746 + SMc00550 0.53 -0.0
1,219,747 - SMc00550 0.54 -1.7
1,219,747 - SMc00550 0.54 -1.5
1,219,747 - SMc00550 0.54 +0.4
1,219,747 - SMc00550 0.54 +1.3
1,219,747 - SMc00550 0.54 -0.8
1,219,976 - SMc00550 0.66 -2.9
1,220,101 + SMc00550 0.72 -0.1
1,220,101 + SMc00550 0.72 -1.3
1,220,102 - SMc00550 0.72 -0.1
1,220,490 + -0.5
1,220,491 - +3.5
1,220,509 + +0.7
1,222,370 - +0.1
1,222,370 - -0.5
1,222,370 - -2.7

Or see this region's nucleotide sequence