Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00350 and SMc00351 are separated by 175 nucleotides SMc00351 and SMc00352 are separated by 1 nucleotides SMc00352 and SMc00353 are separated by 35 nucleotides SMc00353 and SMc00354 are separated by 176 nucleotides
SMc00350: SMc00350 - transport transmembrane protein, at 305,507 to 306,772
SMc00350
SMc00351: SMc00351 - hypothetical protein, at 306,948 to 307,541
SMc00351
SMc00352: SMc00352 - acetyltransferase, at 307,543 to 308,070
SMc00352
SMc00353: SMc00353 - transmembrane protein, at 308,106 to 308,828
SMc00353
SMc00354: SMc00354 - hypothetical protein, at 309,005 to 309,670
SMc00354
Position (kb) 307
308
309 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 306.561 kb on - strand, within SMc00350 at 306.681 kb on + strand at 306.732 kb on - strand at 306.732 kb on - strand at 306.908 kb on + strand at 306.909 kb on - strand at 307.252 kb on - strand, within SMc00351 at 307.509 kb on + strand at 307.510 kb on - strand at 307.781 kb on - strand, within SMc00352 at 307.963 kb on + strand, within SMc00352 at 307.963 kb on + strand, within SMc00352 at 307.964 kb on - strand, within SMc00352 at 308.030 kb on - strand at 308.050 kb on + strand at 308.068 kb on + strand at 308.068 kb on + strand at 308.068 kb on + strand at 308.069 kb on - strand at 308.069 kb on - strand at 308.069 kb on - strand at 308.069 kb on - strand at 308.069 kb on - strand at 308.155 kb on + strand at 308.398 kb on + strand, within SMc00353 at 308.399 kb on - strand, within SMc00353 at 308.399 kb on - strand, within SMc00353 at 308.803 kb on - strand at 308.911 kb on - strand at 308.929 kb on + strand at 308.929 kb on + strand at 308.962 kb on + strand at 308.965 kb on + strand at 308.965 kb on + strand at 308.965 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 306,561 - SMc00350 0.83 +0.6 306,681 + -0.5 306,732 - +0.4 306,732 - +1.1 306,908 + -0.2 306,909 - +2.4 307,252 - SMc00351 0.51 +0.5 307,509 + -1.7 307,510 - +0.6 307,781 - SMc00352 0.45 -1.8 307,963 + SMc00352 0.80 -0.9 307,963 + SMc00352 0.80 -1.0 307,964 - SMc00352 0.80 -1.7 308,030 - -1.4 308,050 + -3.5 308,068 + -0.6 308,068 + +0.2 308,068 + +2.5 308,069 - +0.7 308,069 - +1.1 308,069 - +0.5 308,069 - +0.4 308,069 - +1.2 308,155 + +0.8 308,398 + SMc00353 0.40 +0.2 308,399 - SMc00353 0.41 -0.9 308,399 - SMc00353 0.41 -0.2 308,803 - +0.8 308,911 - -1.0 308,929 + -2.1 308,929 + +0.1 308,962 + -1.0 308,965 + -1.2 308,965 + +0.2 308,965 + -0.2
Or see this region's nucleotide sequence