Strain Fitness in Sinorhizobium meliloti 1021 around SMc00332

Experiment: Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00331 and SMc00435 are separated by 54 nucleotidesSMc00435 and SMc00332 are separated by 245 nucleotidesSMc00332 and SMc00333 are separated by 284 nucleotides SMc00331: SMc00331 - hypothetical protein, at 284,921 to 285,928 SMc00331 SMc00435: SMc00435 - tRNA-Ala, at 285,983 to 286,058 SMc00435 SMc00332: SMc00332 - hypothetical protein, at 286,304 to 286,693 SMc00332 SMc00333: SMc00333 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 286,978 to 288,345 SMc00333 Position (kb) 286 287Strain fitness (log2 ratio) -1 0 1at 285.304 kb on - strand, within SMc00331at 285.811 kb on + strand, within SMc00331at 285.811 kb on + strand, within SMc00331at 285.812 kb on - strand, within SMc00331at 285.833 kb on + strandat 285.834 kb on - strandat 285.889 kb on - strandat 285.907 kb on + strandat 285.946 kb on + strandat 285.947 kb on - strandat 285.947 kb on - strandat 285.964 kb on - strandat 286.179 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM
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285,304 - SMc00331 0.38 -0.5
285,811 + SMc00331 0.88 +0.9
285,811 + SMc00331 0.88 +0.8
285,812 - SMc00331 0.88 +0.4
285,833 + -1.5
285,834 - +1.0
285,889 - +1.5
285,907 + -1.4
285,946 + +0.8
285,947 - +0.7
285,947 - -0.3
285,964 - +0.4
286,179 - -1.0

Or see this region's nucleotide sequence