Strain Fitness in Sinorhizobium meliloti 1021 around SMc00093

Experiment: Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00030 and SMc00031 overlap by 1 nucleotidesSMc00031 and SMc00093 are separated by 1 nucleotidesSMc00093 and SMc00094 are separated by 210 nucleotides SMc00030: SMc00030 - hypothetical protein, at 1,038,426 to 1,038,812 SMc00030 SMc00031: SMc00031 - hypothetical protein, at 1,038,812 to 1,039,291 SMc00031 SMc00093: SMc00093 - choline dehydrogenase, at 1,039,293 to 1,040,942 SMc00093 SMc00094: SMc00094 - betaine aldehyde dehydrogenase, at 1,041,153 to 1,042,616 SMc00094 Position (kb) 1039 1040 1041Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1038.496 kb on - strand, within SMc00030at 1038.553 kb on + strand, within SMc00030at 1038.554 kb on - strand, within SMc00030at 1038.777 kb on + strandat 1038.778 kb on - strandat 1038.786 kb on + strandat 1038.787 kb on - strandat 1038.881 kb on + strand, within SMc00031at 1038.881 kb on + strand, within SMc00031at 1038.882 kb on - strand, within SMc00031at 1038.906 kb on + strand, within SMc00031at 1038.907 kb on - strand, within SMc00031at 1038.907 kb on - strand, within SMc00031at 1038.907 kb on - strand, within SMc00031at 1038.907 kb on - strand, within SMc00031at 1039.002 kb on - strand, within SMc00031at 1039.012 kb on + strand, within SMc00031at 1039.012 kb on + strand, within SMc00031at 1039.013 kb on - strand, within SMc00031at 1039.029 kb on + strand, within SMc00031at 1039.082 kb on + strand, within SMc00031at 1039.083 kb on - strand, within SMc00031at 1039.083 kb on - strand, within SMc00031at 1039.290 kb on - strandat 1039.294 kb on + strandat 1039.370 kb on + strandat 1039.370 kb on + strandat 1039.423 kb on + strandat 1039.424 kb on - strandat 1039.552 kb on + strand, within SMc00093at 1039.552 kb on + strand, within SMc00093at 1039.553 kb on - strand, within SMc00093at 1039.553 kb on - strand, within SMc00093at 1039.640 kb on - strand, within SMc00093at 1039.724 kb on + strand, within SMc00093at 1039.725 kb on - strand, within SMc00093at 1039.725 kb on - strand, within SMc00093at 1039.725 kb on - strand, within SMc00093at 1039.726 kb on + strand, within SMc00093at 1039.726 kb on + strand, within SMc00093at 1039.727 kb on - strand, within SMc00093at 1039.855 kb on + strand, within SMc00093at 1039.856 kb on - strand, within SMc00093at 1039.856 kb on - strand, within SMc00093at 1039.856 kb on - strand, within SMc00093at 1039.882 kb on + strand, within SMc00093at 1039.882 kb on + strand, within SMc00093at 1040.023 kb on + strand, within SMc00093at 1040.024 kb on - strand, within SMc00093at 1040.112 kb on + strand, within SMc00093at 1040.112 kb on + strand, within SMc00093at 1040.347 kb on + strand, within SMc00093at 1040.426 kb on + strand, within SMc00093at 1040.426 kb on + strand, within SMc00093at 1040.428 kb on + strand, within SMc00093at 1040.429 kb on - strand, within SMc00093at 1040.578 kb on + strand, within SMc00093at 1040.578 kb on + strand, within SMc00093at 1040.578 kb on + strand, within SMc00093at 1040.579 kb on - strand, within SMc00093at 1040.662 kb on + strand, within SMc00093at 1040.662 kb on + strand, within SMc00093at 1040.663 kb on - strandat 1040.663 kb on - strand, within SMc00093at 1040.663 kb on - strand, within SMc00093at 1040.663 kb on - strandat 1040.758 kb on + strand, within SMc00093at 1040.758 kb on + strand, within SMc00093at 1040.768 kb on + strand, within SMc00093at 1040.768 kb on + strand, within SMc00093at 1040.768 kb on + strand, within SMc00093at 1040.768 kb on + strand, within SMc00093at 1040.768 kb on + strand, within SMc00093at 1040.768 kb on + strand, within SMc00093at 1040.887 kb on + strandat 1041.111 kb on - strandat 1041.123 kb on - strandat 1041.187 kb on + strandat 1041.188 kb on - strandat 1041.208 kb on + strandat 1041.208 kb on + strandat 1041.208 kb on + strandat 1041.208 kb on + strandat 1041.209 kb on - strandat 1041.295 kb on + strandat 1041.295 kb on + strandat 1041.295 kb on + strandat 1041.296 kb on - strandat 1041.521 kb on + strand, within SMc00094at 1041.522 kb on - strand, within SMc00094at 1041.522 kb on - strand, within SMc00094at 1041.523 kb on + strand, within SMc00094at 1041.523 kb on + strand, within SMc00094at 1041.523 kb on + strand, within SMc00094at 1041.523 kb on + strand, within SMc00094at 1041.523 kb on + strand, within SMc00094at 1041.523 kb on + strand, within SMc00094at 1041.523 kb on + strand, within SMc00094at 1041.523 kb on + strand, within SMc00094at 1041.523 kb on + strand, within SMc00094at 1041.523 kb on + strand, within SMc00094at 1041.523 kb on + strand, within SMc00094at 1041.523 kb on + strand, within SMc00094at 1041.523 kb on + strand, within SMc00094at 1041.523 kb on + strand, within SMc00094at 1041.524 kb on - strand, within SMc00094at 1041.524 kb on - strand, within SMc00094at 1041.524 kb on - strand, within SMc00094at 1041.524 kb on - strand, within SMc00094at 1041.524 kb on - strand, within SMc00094at 1041.545 kb on + strand, within SMc00094at 1041.545 kb on + strand, within SMc00094at 1041.546 kb on - strand, within SMc00094at 1041.605 kb on - strand, within SMc00094at 1041.605 kb on - strand, within SMc00094

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM
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1,038,496 - SMc00030 0.18 +0.2
1,038,553 + SMc00030 0.33 +0.4
1,038,554 - SMc00030 0.33 +0.1
1,038,777 + +1.2
1,038,778 - -1.9
1,038,786 + +1.8
1,038,787 - -1.6
1,038,881 + SMc00031 0.14 -0.2
1,038,881 + SMc00031 0.14 -0.5
1,038,882 - SMc00031 0.15 -0.9
1,038,906 + SMc00031 0.20 -0.2
1,038,907 - SMc00031 0.20 +0.8
1,038,907 - SMc00031 0.20 -0.0
1,038,907 - SMc00031 0.20 -0.4
1,038,907 - SMc00031 0.20 +0.0
1,039,002 - SMc00031 0.40 +1.3
1,039,012 + SMc00031 0.42 +0.1
1,039,012 + SMc00031 0.42 +0.5
1,039,013 - SMc00031 0.42 +0.3
1,039,029 + SMc00031 0.45 -0.2
1,039,082 + SMc00031 0.56 -0.8
1,039,083 - SMc00031 0.56 -0.5
1,039,083 - SMc00031 0.56 +1.0
1,039,290 - -1.7
1,039,294 + -1.2
1,039,370 + +1.7
1,039,370 + +1.9
1,039,423 + -0.5
1,039,424 - +1.1
1,039,552 + SMc00093 0.16 +3.2
1,039,552 + SMc00093 0.16 +2.0
1,039,553 - SMc00093 0.16 +1.7
1,039,553 - SMc00093 0.16 +2.0
1,039,640 - SMc00093 0.21 +2.5
1,039,724 + SMc00093 0.26 +1.8
1,039,725 - SMc00093 0.26 +1.6
1,039,725 - SMc00093 0.26 +1.2
1,039,725 - SMc00093 0.26 -0.2
1,039,726 + SMc00093 0.26 +2.3
1,039,726 + SMc00093 0.26 +2.1
1,039,727 - SMc00093 0.26 -1.7
1,039,855 + SMc00093 0.34 +1.5
1,039,856 - SMc00093 0.34 +2.7
1,039,856 - SMc00093 0.34 +1.1
1,039,856 - SMc00093 0.34 +1.2
1,039,882 + SMc00093 0.36 +1.7
1,039,882 + SMc00093 0.36 +1.9
1,040,023 + SMc00093 0.44 +1.3
1,040,024 - SMc00093 0.44 +2.2
1,040,112 + SMc00093 0.50 +2.3
1,040,112 + SMc00093 0.50 +1.9
1,040,347 + SMc00093 0.64 +1.3
1,040,426 + SMc00093 0.69 +1.3
1,040,426 + SMc00093 0.69 +1.5
1,040,428 + SMc00093 0.69 +1.1
1,040,429 - SMc00093 0.69 +1.2
1,040,578 + SMc00093 0.78 +1.7
1,040,578 + SMc00093 0.78 -1.6
1,040,578 + SMc00093 0.78 +1.5
1,040,579 - SMc00093 0.78 +1.7
1,040,662 + SMc00093 0.83 +2.5
1,040,662 + SMc00093 0.83 +2.1
1,040,663 - +2.9
1,040,663 - SMc00093 0.83 +1.9
1,040,663 - SMc00093 0.83 +1.6
1,040,663 - +1.3
1,040,758 + SMc00093 0.89 +1.1
1,040,758 + SMc00093 0.89 -0.4
1,040,768 + SMc00093 0.89 +2.6
1,040,768 + SMc00093 0.89 +0.6
1,040,768 + SMc00093 0.89 +2.1
1,040,768 + SMc00093 0.89 +1.7
1,040,768 + SMc00093 0.89 +1.7
1,040,768 + SMc00093 0.89 +2.9
1,040,887 + +0.5
1,041,111 - -1.4
1,041,123 - +0.1
1,041,187 + +0.1
1,041,188 - -0.8
1,041,208 + +1.8
1,041,208 + +2.4
1,041,208 + +0.4
1,041,208 + +3.0
1,041,209 - -1.0
1,041,295 + +1.5
1,041,295 + +1.7
1,041,295 + +1.6
1,041,296 - -0.6
1,041,521 + SMc00094 0.25 +2.1
1,041,522 - SMc00094 0.25 -0.0
1,041,522 - SMc00094 0.25 -0.5
1,041,523 + SMc00094 0.25 -0.8
1,041,523 + SMc00094 0.25 -1.7
1,041,523 + SMc00094 0.25 +2.3
1,041,523 + SMc00094 0.25 +2.0
1,041,523 + SMc00094 0.25 +1.4
1,041,523 + SMc00094 0.25 +2.5
1,041,523 + SMc00094 0.25 +2.0
1,041,523 + SMc00094 0.25 -1.4
1,041,523 + SMc00094 0.25 +2.3
1,041,523 + SMc00094 0.25 +0.6
1,041,523 + SMc00094 0.25 +2.7
1,041,523 + SMc00094 0.25 +2.1
1,041,523 + SMc00094 0.25 -1.0
1,041,523 + SMc00094 0.25 +1.9
1,041,524 - SMc00094 0.25 -0.3
1,041,524 - SMc00094 0.25 -0.4
1,041,524 - SMc00094 0.25 +0.5
1,041,524 - SMc00094 0.25 +0.8
1,041,524 - SMc00094 0.25 +0.2
1,041,545 + SMc00094 0.27 +1.9
1,041,545 + SMc00094 0.27 +2.8
1,041,546 - SMc00094 0.27 +0.7
1,041,605 - SMc00094 0.31 +1.4
1,041,605 - SMc00094 0.31 +0.2

Or see this region's nucleotide sequence