Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1910 and SMa1913 are separated by 342 nucleotides
SMa1910: SMa1910 - hypothetical protein, at 1,087,264 to 1,087,539
SMa1910
SMa1913: SMa1913 - Na+/H+ antiporter, at 1,087,882 to 1,089,270
SMa1913
Position (kb)
1087
1088 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1086.678 kb on + strand at 1086.685 kb on + strand at 1086.685 kb on + strand at 1086.685 kb on + strand at 1086.686 kb on - strand at 1086.687 kb on + strand at 1086.688 kb on - strand at 1086.688 kb on - strand at 1086.688 kb on - strand at 1086.688 kb on - strand at 1086.989 kb on + strand at 1087.009 kb on + strand at 1087.009 kb on + strand at 1087.009 kb on + strand at 1087.009 kb on + strand at 1087.009 kb on + strand at 1087.009 kb on + strand at 1087.009 kb on + strand at 1087.010 kb on - strand at 1087.010 kb on - strand at 1087.010 kb on - strand at 1087.010 kb on - strand at 1087.011 kb on + strand at 1087.011 kb on + strand at 1087.012 kb on - strand at 1087.012 kb on - strand at 1087.013 kb on + strand at 1087.013 kb on + strand at 1087.014 kb on - strand at 1087.014 kb on - strand at 1087.014 kb on - strand at 1087.014 kb on - strand at 1087.064 kb on + strand at 1087.065 kb on - strand at 1087.065 kb on - strand at 1087.078 kb on - strand at 1087.136 kb on - strand at 1087.136 kb on - strand at 1087.139 kb on + strand at 1087.175 kb on - strand at 1087.185 kb on + strand at 1087.214 kb on + strand at 1087.275 kb on - strand at 1087.341 kb on + strand, within SMa1910 at 1087.465 kb on + strand, within SMa1910 at 1087.466 kb on - strand, within SMa1910 at 1087.487 kb on - strand, within SMa1910 at 1087.511 kb on - strand, within SMa1910 at 1087.511 kb on - strand, within SMa1910 at 1087.568 kb on + strand at 1087.651 kb on + strand at 1087.651 kb on + strand at 1087.654 kb on + strand at 1087.689 kb on + strand at 1087.689 kb on + strand at 1087.712 kb on + strand at 1087.713 kb on - strand at 1087.880 kb on + strand at 1087.881 kb on - strand at 1087.881 kb on - strand at 1087.903 kb on - strand at 1088.053 kb on - strand, within SMa1913 at 1088.168 kb on - strand, within SMa1913 at 1088.168 kb on - strand, within SMa1913 at 1088.385 kb on + strand, within SMa1913 at 1088.386 kb on - strand, within SMa1913 at 1088.502 kb on - strand, within SMa1913
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 1,086,678 + -0.9 1,086,685 + -0.3 1,086,685 + -0.3 1,086,685 + -1.2 1,086,686 - +2.5 1,086,687 + +0.1 1,086,688 - -2.0 1,086,688 - -2.0 1,086,688 - +0.1 1,086,688 - -0.5 1,086,989 + -1.2 1,087,009 + +0.6 1,087,009 + -1.1 1,087,009 + -1.6 1,087,009 + -0.8 1,087,009 + -0.1 1,087,009 + +1.1 1,087,009 + +2.0 1,087,010 - +0.0 1,087,010 - +0.4 1,087,010 - +0.3 1,087,010 - +1.1 1,087,011 + -0.5 1,087,011 + -1.3 1,087,012 - -0.4 1,087,012 - +0.5 1,087,013 + -0.5 1,087,013 + -0.9 1,087,014 - +2.1 1,087,014 - -2.0 1,087,014 - +0.1 1,087,014 - +0.1 1,087,064 + -0.7 1,087,065 - -0.4 1,087,065 - -0.5 1,087,078 - -2.1 1,087,136 - -0.3 1,087,136 - -0.6 1,087,139 + -1.0 1,087,175 - +0.2 1,087,185 + -2.7 1,087,214 + +0.8 1,087,275 - +0.6 1,087,341 + SMa1910 0.28 -0.8 1,087,465 + SMa1910 0.73 -1.1 1,087,466 - SMa1910 0.73 -0.4 1,087,487 - SMa1910 0.81 -0.2 1,087,511 - SMa1910 0.89 +0.5 1,087,511 - SMa1910 0.89 -0.2 1,087,568 + +0.8 1,087,651 + +2.7 1,087,651 + -0.6 1,087,654 + -3.2 1,087,689 + +0.7 1,087,689 + +0.0 1,087,712 + -0.4 1,087,713 - -1.2 1,087,880 + -0.8 1,087,881 - -0.4 1,087,881 - -1.5 1,087,903 - +0.4 1,088,053 - SMa1913 0.12 -0.5 1,088,168 - SMa1913 0.21 +0.9 1,088,168 - SMa1913 0.21 +0.0 1,088,385 + SMa1913 0.36 +0.1 1,088,386 - SMa1913 0.36 -1.9 1,088,502 - SMa1913 0.45 +1.1
Or see this region's nucleotide sequence