Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1905 and SMa1907 are separated by 658 nucleotides
SMa1905: SMa1905 - MrcB penicillin binding protein B, at 1,082,806 to 1,085,151
SMa1905
SMa1907: SMa1907 - hypothetical protein, at 1,085,810 to 1,086,190
SMa1907
Position (kb)
1085
1086
1087 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1084.954 kb on - strand at 1085.062 kb on - strand at 1085.062 kb on - strand at 1085.080 kb on + strand at 1085.080 kb on + strand at 1085.080 kb on + strand at 1085.081 kb on - strand at 1085.110 kb on + strand at 1085.111 kb on - strand at 1085.149 kb on + strand at 1085.247 kb on - strand at 1085.377 kb on - strand at 1085.377 kb on - strand at 1085.378 kb on + strand at 1085.379 kb on - strand at 1085.431 kb on - strand at 1085.431 kb on - strand at 1085.431 kb on - strand at 1085.503 kb on + strand at 1085.503 kb on + strand at 1085.812 kb on - strand at 1085.994 kb on + strand, within SMa1907 at 1085.995 kb on - strand, within SMa1907 at 1086.046 kb on + strand, within SMa1907 at 1086.126 kb on + strand, within SMa1907 at 1086.134 kb on - strand, within SMa1907 at 1086.171 kb on - strand at 1086.171 kb on - strand at 1086.171 kb on - strand at 1086.195 kb on - strand at 1086.678 kb on + strand at 1086.685 kb on + strand at 1086.685 kb on + strand at 1086.685 kb on + strand at 1086.686 kb on - strand at 1086.687 kb on + strand at 1086.688 kb on - strand at 1086.688 kb on - strand at 1086.688 kb on - strand at 1086.688 kb on - strand at 1086.989 kb on + strand at 1087.009 kb on + strand at 1087.009 kb on + strand at 1087.009 kb on + strand at 1087.009 kb on + strand at 1087.009 kb on + strand at 1087.009 kb on + strand at 1087.009 kb on + strand at 1087.010 kb on - strand at 1087.010 kb on - strand at 1087.010 kb on - strand at 1087.010 kb on - strand at 1087.011 kb on + strand at 1087.011 kb on + strand at 1087.012 kb on - strand at 1087.012 kb on - strand at 1087.013 kb on + strand at 1087.013 kb on + strand at 1087.014 kb on - strand at 1087.014 kb on - strand at 1087.014 kb on - strand at 1087.014 kb on - strand at 1087.064 kb on + strand at 1087.065 kb on - strand at 1087.065 kb on - strand at 1087.078 kb on - strand at 1087.136 kb on - strand at 1087.136 kb on - strand at 1087.139 kb on + strand at 1087.175 kb on - strand at 1087.185 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 1,084,954 - +2.1 1,085,062 - -0.3 1,085,062 - -0.1 1,085,080 + +0.5 1,085,080 + +0.7 1,085,080 + +0.8 1,085,081 - -0.4 1,085,110 + +0.3 1,085,111 - +0.1 1,085,149 + -1.0 1,085,247 - +0.7 1,085,377 - -0.9 1,085,377 - -2.0 1,085,378 + -1.5 1,085,379 - -0.3 1,085,431 - -0.3 1,085,431 - +2.0 1,085,431 - -0.4 1,085,503 + -0.2 1,085,503 + -1.3 1,085,812 - -1.0 1,085,994 + SMa1907 0.48 +0.4 1,085,995 - SMa1907 0.49 -1.2 1,086,046 + SMa1907 0.62 -0.1 1,086,126 + SMa1907 0.83 -1.1 1,086,134 - SMa1907 0.85 -0.2 1,086,171 - -1.8 1,086,171 - -0.8 1,086,171 - -0.0 1,086,195 - +0.6 1,086,678 + -0.9 1,086,685 + -0.3 1,086,685 + -0.3 1,086,685 + -1.2 1,086,686 - +2.5 1,086,687 + +0.1 1,086,688 - -2.0 1,086,688 - -2.0 1,086,688 - +0.1 1,086,688 - -0.5 1,086,989 + -1.2 1,087,009 + +0.6 1,087,009 + -1.1 1,087,009 + -1.6 1,087,009 + -0.8 1,087,009 + -0.1 1,087,009 + +1.1 1,087,009 + +2.0 1,087,010 - +0.0 1,087,010 - +0.4 1,087,010 - +0.3 1,087,010 - +1.1 1,087,011 + -0.5 1,087,011 + -1.3 1,087,012 - -0.4 1,087,012 - +0.5 1,087,013 + -0.5 1,087,013 + -0.9 1,087,014 - +2.1 1,087,014 - -2.0 1,087,014 - +0.1 1,087,014 - +0.1 1,087,064 + -0.7 1,087,065 - -0.4 1,087,065 - -0.5 1,087,078 - -2.1 1,087,136 - -0.3 1,087,136 - -0.6 1,087,139 + -1.0 1,087,175 - +0.2 1,087,185 + -2.7
Or see this region's nucleotide sequence