Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1652 and SMa1653 are separated by 2 nucleotides SMa1653 and SMa1654 are separated by 162 nucleotides
SMa1652: SMa1652 - hydantoin racemase, at 923,065 to 923,850
SMa1652
SMa1653: SMa1653 - hypothetical protein, at 923,853 to 924,578
SMa1653
SMa1654: SMa1654 - GntR family transcriptional regulator, at 924,741 to 925,439
SMa1654
Position (kb) 923
924
925 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 923.037 kb on - strand at 923.041 kb on + strand at 923.046 kb on - strand at 923.081 kb on + strand at 923.095 kb on - strand at 923.095 kb on - strand at 923.095 kb on - strand at 923.095 kb on - strand at 923.206 kb on + strand, within SMa1652 at 923.220 kb on - strand, within SMa1652 at 923.220 kb on - strand, within SMa1652 at 923.449 kb on + strand, within SMa1652 at 923.498 kb on + strand, within SMa1652 at 923.517 kb on + strand, within SMa1652 at 923.517 kb on + strand, within SMa1652 at 923.517 kb on + strand, within SMa1652 at 923.518 kb on - strand, within SMa1652 at 923.591 kb on + strand, within SMa1652 at 923.592 kb on - strand, within SMa1652 at 923.630 kb on + strand, within SMa1652 at 923.740 kb on + strand, within SMa1652 at 923.759 kb on - strand, within SMa1652 at 923.841 kb on - strand at 923.841 kb on - strand at 923.844 kb on + strand at 923.845 kb on - strand at 923.848 kb on + strand at 923.848 kb on + strand at 923.848 kb on + strand at 923.849 kb on - strand at 923.849 kb on - strand at 924.313 kb on + strand, within SMa1653 at 924.321 kb on + strand, within SMa1653 at 924.321 kb on + strand, within SMa1653 at 924.322 kb on - strand, within SMa1653 at 924.322 kb on - strand, within SMa1653 at 924.357 kb on + strand, within SMa1653 at 924.357 kb on + strand, within SMa1653 at 924.357 kb on + strand, within SMa1653 at 924.358 kb on - strand, within SMa1653 at 924.494 kb on - strand, within SMa1653 at 924.649 kb on - strand at 924.685 kb on + strand at 924.700 kb on + strand at 924.792 kb on + strand at 924.792 kb on + strand at 924.792 kb on + strand at 924.793 kb on - strand at 924.873 kb on + strand, within SMa1654 at 925.013 kb on - strand, within SMa1654 at 925.162 kb on + strand, within SMa1654 at 925.162 kb on + strand, within SMa1654 at 925.188 kb on - strand, within SMa1654 at 925.188 kb on - strand, within SMa1654 at 925.498 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 923,037 - +1.4 923,041 + +1.5 923,046 - -0.7 923,081 + -3.3 923,095 - +1.2 923,095 - +0.5 923,095 - +0.3 923,095 - -0.9 923,206 + SMa1652 0.18 -0.7 923,220 - SMa1652 0.20 +0.2 923,220 - SMa1652 0.20 -1.5 923,449 + SMa1652 0.49 +0.8 923,498 + SMa1652 0.55 -1.0 923,517 + SMa1652 0.58 -0.0 923,517 + SMa1652 0.58 +0.1 923,517 + SMa1652 0.58 -0.5 923,518 - SMa1652 0.58 +1.4 923,591 + SMa1652 0.67 -1.9 923,592 - SMa1652 0.67 +1.1 923,630 + SMa1652 0.72 -0.3 923,740 + SMa1652 0.86 +1.1 923,759 - SMa1652 0.88 +0.3 923,841 - +0.4 923,841 - -1.4 923,844 + +0.1 923,845 - +0.2 923,848 + +0.2 923,848 + -1.7 923,848 + +1.1 923,849 - +0.1 923,849 - +1.0 924,313 + SMa1653 0.63 +2.1 924,321 + SMa1653 0.64 -0.3 924,321 + SMa1653 0.64 +0.5 924,322 - SMa1653 0.65 +0.3 924,322 - SMa1653 0.65 -0.1 924,357 + SMa1653 0.69 +2.0 924,357 + SMa1653 0.69 -1.4 924,357 + SMa1653 0.69 +1.1 924,358 - SMa1653 0.70 +1.6 924,494 - SMa1653 0.88 -0.2 924,649 - -2.4 924,685 + -1.0 924,700 + +0.6 924,792 + +0.6 924,792 + -0.1 924,792 + +0.4 924,793 - +1.4 924,873 + SMa1654 0.19 +1.0 925,013 - SMa1654 0.39 -0.3 925,162 + SMa1654 0.60 -3.2 925,162 + SMa1654 0.60 -0.7 925,188 - SMa1654 0.64 -2.3 925,188 - SMa1654 0.64 +0.3 925,498 + +0.3
Or see this region's nucleotide sequence