Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1637 and SMa1639 are separated by 598 nucleotides SMa1639 and SMa1641 are separated by 12 nucleotides SMa1641 and SMa1643 overlap by 4 nucleotides SMa1643 and SMa1644 are separated by 97 nucleotides
SMa1637: SMa1637 - transposase TRm17b, at 912,620 to 913,126
SMa1637
SMa1639: SMa1639 - hypothetical protein, at 913,725 to 914,000
SMa1639
SMa1641: SMa1641 - NreB protein, at 914,013 to 915,335
SMa1641
SMa1643: SMa1643 - hypothetical protein, at 915,332 to 915,670
SMa1643
SMa1644: SMa1644 - ABC transporter permease, at 915,768 to 916,487
SMa1644
Position (kb) 914
915
916 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 913.578 kb on + strand at 913.579 kb on - strand at 913.641 kb on + strand at 913.642 kb on - strand at 913.687 kb on + strand at 913.688 kb on - strand at 913.724 kb on + strand at 913.966 kb on + strand, within SMa1639 at 913.967 kb on - strand, within SMa1639 at 914.282 kb on - strand, within SMa1641 at 914.316 kb on + strand, within SMa1641 at 914.317 kb on - strand, within SMa1641 at 914.317 kb on - strand, within SMa1641 at 914.317 kb on - strand, within SMa1641 at 914.317 kb on - strand, within SMa1641 at 914.412 kb on - strand, within SMa1641 at 914.442 kb on + strand, within SMa1641 at 914.443 kb on - strand, within SMa1641 at 914.443 kb on - strand, within SMa1641 at 914.608 kb on - strand, within SMa1641 at 914.608 kb on - strand, within SMa1641 at 914.638 kb on - strand, within SMa1641 at 914.638 kb on - strand, within SMa1641 at 914.669 kb on - strand, within SMa1641 at 914.908 kb on + strand, within SMa1641 at 914.966 kb on + strand, within SMa1641 at 915.076 kb on - strand, within SMa1641 at 915.565 kb on + strand, within SMa1643 at 915.587 kb on - strand, within SMa1643 at 915.726 kb on - strand at 915.804 kb on + strand at 915.805 kb on - strand at 915.825 kb on - strand at 915.825 kb on - strand at 915.945 kb on + strand, within SMa1644 at 915.945 kb on + strand, within SMa1644 at 915.946 kb on - strand, within SMa1644 at 916.034 kb on - strand, within SMa1644 at 916.064 kb on + strand, within SMa1644 at 916.065 kb on - strand, within SMa1644 at 916.065 kb on - strand, within SMa1644
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 913,578 + -1.0 913,579 - +1.7 913,641 + +2.1 913,642 - -1.0 913,687 + +0.4 913,688 - -3.8 913,724 + -3.7 913,966 + SMa1639 0.87 -3.6 913,967 - SMa1639 0.88 -1.1 914,282 - SMa1641 0.20 -4.6 914,316 + SMa1641 0.23 -3.1 914,317 - SMa1641 0.23 -4.5 914,317 - SMa1641 0.23 -5.4 914,317 - SMa1641 0.23 -5.1 914,317 - SMa1641 0.23 -6.1 914,412 - SMa1641 0.30 -2.3 914,442 + SMa1641 0.32 -0.5 914,443 - SMa1641 0.33 -5.1 914,443 - SMa1641 0.33 -4.2 914,608 - SMa1641 0.45 -1.4 914,608 - SMa1641 0.45 -4.6 914,638 - SMa1641 0.47 -2.2 914,638 - SMa1641 0.47 -2.3 914,669 - SMa1641 0.50 -2.8 914,908 + SMa1641 0.68 -1.2 914,966 + SMa1641 0.72 -4.8 915,076 - SMa1641 0.80 -4.4 915,565 + SMa1643 0.69 +0.3 915,587 - SMa1643 0.75 -1.5 915,726 - +0.1 915,804 + +0.4 915,805 - +0.0 915,825 - +1.4 915,825 - -0.8 915,945 + SMa1644 0.25 +0.8 915,945 + SMa1644 0.25 +2.2 915,946 - SMa1644 0.25 +0.0 916,034 - SMa1644 0.37 +1.6 916,064 + SMa1644 0.41 -0.1 916,065 - SMa1644 0.41 +0.8 916,065 - SMa1644 0.41 +2.5
Or see this region's nucleotide sequence