Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1573 and SMa1576 are separated by 6 nucleotides SMa1576 and SMa1578 are separated by 42 nucleotides SMa1578 and SMa1579 are separated by 259 nucleotides
SMa1573: SMa1573 - CpaE2 pilus assembly protein, at 869,830 to 871,590
SMa1573
SMa1576: SMa1576 - CpaB2 pilus assembly protein, at 871,597 to 872,388
SMa1576
SMa1578: SMa1578 - CpaA2 pilus assembly protein, at 872,431 to 872,943
SMa1578
SMa1579: SMa1579 - hypothetical protein, at 873,203 to 874,498
SMa1579
Position (kb) 872
873 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 871.508 kb on - strand at 871.508 kb on - strand at 871.717 kb on - strand, within SMa1576 at 871.880 kb on - strand, within SMa1576 at 871.944 kb on + strand, within SMa1576 at 871.944 kb on + strand, within SMa1576 at 872.048 kb on + strand, within SMa1576 at 872.110 kb on + strand, within SMa1576 at 872.111 kb on - strand, within SMa1576 at 872.379 kb on + strand at 872.433 kb on - strand at 872.502 kb on - strand, within SMa1578 at 872.508 kb on + strand, within SMa1578 at 872.572 kb on + strand, within SMa1578 at 872.572 kb on + strand at 872.628 kb on - strand, within SMa1578 at 872.851 kb on + strand, within SMa1578 at 872.886 kb on - strand, within SMa1578 at 873.040 kb on - strand at 873.114 kb on + strand at 873.114 kb on + strand at 873.115 kb on - strand at 873.365 kb on + strand, within SMa1579 at 873.408 kb on + strand, within SMa1579 at 873.483 kb on + strand, within SMa1579 at 873.484 kb on - strand, within SMa1579 at 873.484 kb on - strand, within SMa1579 at 873.738 kb on + strand, within SMa1579 at 873.739 kb on - strand, within SMa1579 at 873.739 kb on - strand, within SMa1579 at 873.769 kb on + strand, within SMa1579 at 873.769 kb on + strand, within SMa1579
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 871,508 - -3.8 871,508 - +0.8 871,717 - SMa1576 0.15 -0.4 871,880 - SMa1576 0.36 -1.2 871,944 + SMa1576 0.44 -0.5 871,944 + SMa1576 0.44 -0.5 872,048 + SMa1576 0.57 +0.2 872,110 + SMa1576 0.65 -1.2 872,111 - SMa1576 0.65 -1.2 872,379 + +0.1 872,433 - +1.8 872,502 - SMa1578 0.14 -2.0 872,508 + SMa1578 0.15 -0.5 872,572 + SMa1578 0.27 +1.9 872,572 + +0.3 872,628 - SMa1578 0.38 -0.5 872,851 + SMa1578 0.82 -2.5 872,886 - SMa1578 0.89 -0.6 873,040 - -0.5 873,114 + +0.7 873,114 + -1.8 873,115 - +0.4 873,365 + SMa1579 0.12 +0.2 873,408 + SMa1579 0.16 -2.5 873,483 + SMa1579 0.22 -1.3 873,484 - SMa1579 0.22 -0.7 873,484 - SMa1579 0.22 +1.6 873,738 + SMa1579 0.41 +0.0 873,739 - SMa1579 0.41 +0.1 873,739 - SMa1579 0.41 -0.2 873,769 + SMa1579 0.44 +0.9 873,769 + SMa1579 0.44 +0.6
Or see this region's nucleotide sequence