Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1029 and SMa1030 overlap by 4 nucleotides SMa1030 and SMa1032 are separated by 87 nucleotides SMa1032 and SMa1033 are separated by 197 nucleotides SMa1033 and SMa1036 are separated by 52 nucleotides SMa1036 and SMa1037 overlap by 4 nucleotides
SMa1029: SMa1029 - TRm1b transposase, at 568,081 to 568,911
SMa1029
SMa1030: SMa1030 - TRm1a transposase, at 568,908 to 569,279
SMa1030
SMa1032: SMa1032 - hypothetical protein, at 569,367 to 569,612
SMa1032
SMa1033: SMa1033 - hypothetical protein, at 569,810 to 570,190
SMa1033
SMa1036: SMa1036 - hypothetical protein, at 570,243 to 570,512
SMa1036
SMa1037: SMa1037 - hypothetical protein, at 570,509 to 571,975
SMa1037
Position (kb) 569
570
571 Strain fitness (log2 ratio) -2
-1
0
1 at 569.671 kb on - strand at 569.688 kb on + strand at 569.727 kb on - strand at 569.798 kb on + strand at 569.799 kb on - strand at 569.799 kb on - strand at 569.815 kb on + strand at 569.815 kb on + strand at 569.816 kb on - strand at 569.941 kb on + strand, within SMa1033 at 569.942 kb on - strand, within SMa1033 at 569.986 kb on + strand, within SMa1033 at 569.987 kb on - strand, within SMa1033 at 569.987 kb on - strand, within SMa1033 at 569.987 kb on - strand, within SMa1033 at 570.088 kb on + strand, within SMa1033 at 570.088 kb on + strand, within SMa1033 at 570.089 kb on - strand, within SMa1033 at 570.091 kb on + strand, within SMa1033 at 570.193 kb on - strand at 570.412 kb on - strand, within SMa1036 at 570.412 kb on - strand, within SMa1036 at 570.413 kb on + strand, within SMa1036 at 570.413 kb on + strand, within SMa1036 at 570.414 kb on - strand, within SMa1036 at 570.414 kb on - strand, within SMa1036 at 570.694 kb on - strand, within SMa1037 at 570.791 kb on + strand, within SMa1037 at 570.946 kb on + strand, within SMa1037
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 569,671 - +0.4 569,688 + +1.0 569,727 - -0.6 569,798 + +0.2 569,799 - -1.9 569,799 - -1.0 569,815 + -1.5 569,815 + -0.0 569,816 - -0.7 569,941 + SMa1033 0.34 -0.3 569,942 - SMa1033 0.35 -0.9 569,986 + SMa1033 0.46 -0.0 569,987 - SMa1033 0.46 +1.0 569,987 - SMa1033 0.46 -0.1 569,987 - SMa1033 0.46 -0.6 570,088 + SMa1033 0.73 -1.2 570,088 + SMa1033 0.73 +0.4 570,089 - SMa1033 0.73 -0.6 570,091 + SMa1033 0.74 -1.1 570,193 - +0.4 570,412 - SMa1036 0.63 -0.2 570,412 - SMa1036 0.63 +1.2 570,413 + SMa1036 0.63 -0.3 570,413 + SMa1036 0.63 -1.3 570,414 - SMa1036 0.63 -1.9 570,414 - SMa1036 0.63 -0.1 570,694 - SMa1037 0.13 -0.9 570,791 + SMa1037 0.19 +0.4 570,946 + SMa1037 0.30 +0.2
Or see this region's nucleotide sequence