Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0714 and SMa0715 are separated by 1 nucleotides SMa0715 and SMa0717 overlap by 22 nucleotides SMa0717 and SMa0719 are separated by 57 nucleotides SMa0719 and SMa0722 are separated by 98 nucleotides
SMa0714: SMa0714 - ABC transporter ATP-binding protein, at 387,807 to 388,304
SMa0714
SMa0715: SMa0715 - Nucleoside-diphosphate-sugar epimerase, at 388,306 to 389,286
SMa0715
SMa0717: SMa0717 - hypothetical protein, at 389,265 to 390,974
SMa0717
SMa0719: SMa0719 - short-chain alcohol dehydrogenase, at 391,032 to 391,751
SMa0719
SMa0722: SMa0722 - transposase, at 391,850 to 392,461
SMa0722
Position (kb) 389
390
391 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 388.472 kb on + strand, within SMa0715 at 388.472 kb on + strand, within SMa0715 at 388.781 kb on + strand, within SMa0715 at 388.782 kb on - strand, within SMa0715 at 388.992 kb on + strand, within SMa0715 at 388.992 kb on + strand, within SMa0715 at 388.993 kb on - strand, within SMa0715 at 388.993 kb on - strand, within SMa0715 at 388.995 kb on + strand, within SMa0715 at 388.996 kb on - strand, within SMa0715 at 389.037 kb on + strand, within SMa0715 at 389.037 kb on + strand, within SMa0715 at 389.038 kb on - strand, within SMa0715 at 389.061 kb on + strand, within SMa0715 at 389.115 kb on - strand, within SMa0715 at 389.273 kb on + strand at 389.285 kb on - strand at 389.359 kb on + strand at 389.359 kb on + strand at 389.360 kb on - strand at 389.494 kb on - strand, within SMa0717 at 389.787 kb on + strand, within SMa0717 at 389.787 kb on + strand, within SMa0717 at 389.787 kb on + strand, within SMa0717 at 389.787 kb on + strand, within SMa0717 at 389.799 kb on - strand, within SMa0717 at 390.236 kb on + strand, within SMa0717 at 390.251 kb on + strand, within SMa0717 at 390.251 kb on + strand, within SMa0717 at 390.251 kb on + strand, within SMa0717 at 390.252 kb on - strand, within SMa0717 at 390.357 kb on - strand, within SMa0717 at 390.483 kb on + strand, within SMa0717 at 390.508 kb on + strand, within SMa0717 at 390.508 kb on + strand, within SMa0717 at 390.576 kb on + strand, within SMa0717 at 390.576 kb on + strand, within SMa0717 at 390.606 kb on + strand, within SMa0717 at 390.606 kb on + strand, within SMa0717 at 390.606 kb on + strand at 390.606 kb on + strand, within SMa0717 at 390.607 kb on - strand, within SMa0717 at 390.612 kb on + strand, within SMa0717 at 390.993 kb on + strand at 390.993 kb on + strand at 390.994 kb on - strand at 390.994 kb on - strand at 390.996 kb on - strand at 391.077 kb on + strand at 391.077 kb on + strand at 391.078 kb on - strand at 391.385 kb on + strand, within SMa0719 at 391.491 kb on - strand, within SMa0719 at 391.538 kb on - strand, within SMa0719 at 391.620 kb on + strand, within SMa0719 at 391.706 kb on + strand at 391.707 kb on - strand at 391.914 kb on - strand, within SMa0722 at 391.931 kb on - strand, within SMa0722
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 388,472 + SMa0715 0.17 +0.1 388,472 + SMa0715 0.17 +0.1 388,781 + SMa0715 0.48 +0.5 388,782 - SMa0715 0.49 -2.1 388,992 + SMa0715 0.70 +0.7 388,992 + SMa0715 0.70 -0.5 388,993 - SMa0715 0.70 -0.5 388,993 - SMa0715 0.70 -0.3 388,995 + SMa0715 0.70 +0.3 388,996 - SMa0715 0.70 -1.0 389,037 + SMa0715 0.75 -1.4 389,037 + SMa0715 0.75 -0.4 389,038 - SMa0715 0.75 +0.2 389,061 + SMa0715 0.77 -0.0 389,115 - SMa0715 0.82 +0.3 389,273 + -0.7 389,285 - -0.3 389,359 + -0.2 389,359 + +1.4 389,360 - -3.1 389,494 - SMa0717 0.13 -1.3 389,787 + SMa0717 0.31 -2.1 389,787 + SMa0717 0.31 -1.1 389,787 + SMa0717 0.31 -0.5 389,787 + SMa0717 0.31 -1.7 389,799 - SMa0717 0.31 -0.5 390,236 + SMa0717 0.57 -2.3 390,251 + SMa0717 0.58 -0.8 390,251 + SMa0717 0.58 -1.8 390,251 + SMa0717 0.58 -1.3 390,252 - SMa0717 0.58 -0.4 390,357 - SMa0717 0.64 -0.9 390,483 + SMa0717 0.71 -0.2 390,508 + SMa0717 0.73 -1.4 390,508 + SMa0717 0.73 -1.7 390,576 + SMa0717 0.77 -0.2 390,576 + SMa0717 0.77 -2.0 390,606 + SMa0717 0.78 -0.2 390,606 + SMa0717 0.78 +0.2 390,606 + +0.3 390,606 + SMa0717 0.78 +0.2 390,607 - SMa0717 0.78 +0.1 390,612 + SMa0717 0.79 -0.1 390,993 + +0.3 390,993 + +0.2 390,994 - -1.5 390,994 - +1.4 390,996 - -0.3 391,077 + -0.6 391,077 + +0.0 391,078 - +0.3 391,385 + SMa0719 0.49 +1.2 391,491 - SMa0719 0.64 -0.6 391,538 - SMa0719 0.70 -0.3 391,620 + SMa0719 0.82 +0.0 391,706 + +0.2 391,707 - +0.0 391,914 - SMa0722 0.10 -0.1 391,931 - SMa0722 0.13 -0.3
Or see this region's nucleotide sequence