Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0682 and SMa0683 are separated by 205 nucleotides SMa0683 and SMa0684 are separated by 145 nucleotides
SMa0682: SMa0682 - decarboxylase (lysine, ornithine, arginine), at 366,403 to 368,673
SMa0682
SMa0683: SMa0683 - Cation efflux protein, at 368,879 to 369,805
SMa0683
SMa0684: SMa0684 - transport protein, at 369,951 to 371,276
SMa0684
Position (kb) 368
369
370 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 367.885 kb on - strand, within SMa0682 at 367.890 kb on + strand, within SMa0682 at 367.890 kb on + strand, within SMa0682 at 367.890 kb on + strand, within SMa0682 at 367.891 kb on - strand, within SMa0682 at 367.891 kb on - strand, within SMa0682 at 367.891 kb on - strand, within SMa0682 at 367.935 kb on + strand, within SMa0682 at 367.953 kb on + strand, within SMa0682 at 368.006 kb on - strand, within SMa0682 at 368.123 kb on + strand, within SMa0682 at 368.123 kb on + strand, within SMa0682 at 368.370 kb on + strand, within SMa0682 at 368.370 kb on + strand, within SMa0682 at 368.371 kb on - strand, within SMa0682 at 368.458 kb on - strand at 368.537 kb on + strand at 368.567 kb on - strand at 368.628 kb on - strand at 368.663 kb on + strand at 368.664 kb on - strand at 368.722 kb on - strand at 368.769 kb on + strand at 368.785 kb on + strand at 368.785 kb on + strand at 368.786 kb on - strand at 368.905 kb on + strand at 368.947 kb on + strand at 368.947 kb on + strand at 368.948 kb on - strand at 369.176 kb on - strand, within SMa0683 at 369.222 kb on - strand, within SMa0683 at 369.222 kb on - strand, within SMa0683 at 369.240 kb on + strand, within SMa0683 at 369.242 kb on + strand, within SMa0683 at 369.243 kb on - strand, within SMa0683 at 369.435 kb on + strand, within SMa0683 at 369.533 kb on - strand, within SMa0683 at 369.626 kb on + strand, within SMa0683 at 369.626 kb on + strand, within SMa0683 at 369.688 kb on - strand, within SMa0683 at 369.737 kb on - strand at 369.805 kb on + strand at 369.805 kb on + strand at 369.805 kb on + strand at 369.806 kb on - strand at 369.996 kb on + strand at 369.997 kb on - strand at 369.997 kb on - strand at 369.997 kb on - strand at 369.997 kb on - strand at 369.997 kb on - strand at 369.998 kb on + strand at 369.998 kb on + strand at 369.999 kb on - strand at 369.999 kb on - strand at 369.999 kb on - strand at 370.000 kb on + strand at 370.000 kb on + strand at 370.001 kb on - strand at 370.001 kb on - strand at 370.029 kb on + strand at 370.029 kb on + strand at 370.030 kb on - strand at 370.030 kb on - strand at 370.030 kb on - strand at 370.180 kb on + strand, within SMa0684 at 370.181 kb on - strand, within SMa0684 at 370.186 kb on - strand, within SMa0684 at 370.188 kb on - strand, within SMa0684 at 370.225 kb on + strand, within SMa0684 at 370.613 kb on + strand, within SMa0684 at 370.613 kb on + strand, within SMa0684
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 367,885 - SMa0682 0.65 -1.7 367,890 + SMa0682 0.65 -0.5 367,890 + SMa0682 0.65 +1.8 367,890 + SMa0682 0.65 +0.5 367,891 - SMa0682 0.66 -0.9 367,891 - SMa0682 0.66 -0.4 367,891 - SMa0682 0.66 +0.4 367,935 + SMa0682 0.67 -0.5 367,953 + SMa0682 0.68 -0.9 368,006 - SMa0682 0.71 -0.0 368,123 + SMa0682 0.76 +0.3 368,123 + SMa0682 0.76 -1.0 368,370 + SMa0682 0.87 -0.4 368,370 + SMa0682 0.87 -0.2 368,371 - SMa0682 0.87 +0.6 368,458 - -1.1 368,537 + -0.4 368,567 - +0.6 368,628 - -0.3 368,663 + -1.5 368,664 - -0.3 368,722 - -0.1 368,769 + +0.2 368,785 + -0.5 368,785 + +0.9 368,786 - -0.3 368,905 + -0.3 368,947 + +1.4 368,947 + +0.6 368,948 - -1.8 369,176 - SMa0683 0.32 +1.1 369,222 - SMa0683 0.37 +1.0 369,222 - SMa0683 0.37 +0.8 369,240 + SMa0683 0.39 -1.5 369,242 + SMa0683 0.39 +1.4 369,243 - SMa0683 0.39 -1.4 369,435 + SMa0683 0.60 -0.0 369,533 - SMa0683 0.71 +0.0 369,626 + SMa0683 0.81 +0.8 369,626 + SMa0683 0.81 -2.6 369,688 - SMa0683 0.87 -0.0 369,737 - +1.3 369,805 + -0.6 369,805 + +1.2 369,805 + +0.3 369,806 - -0.9 369,996 + -0.4 369,997 - +0.1 369,997 - +0.5 369,997 - +0.1 369,997 - +3.5 369,997 - -1.4 369,998 + -0.9 369,998 + +0.1 369,999 - -1.2 369,999 - -0.1 369,999 - -0.1 370,000 + -0.1 370,000 + +0.1 370,001 - -0.5 370,001 - -0.2 370,029 + +0.7 370,029 + -0.5 370,030 - -0.5 370,030 - -0.4 370,030 - +0.4 370,180 + SMa0684 0.17 -0.4 370,181 - SMa0684 0.17 -0.1 370,186 - SMa0684 0.18 +0.5 370,188 - SMa0684 0.18 +0.5 370,225 + SMa0684 0.21 +1.2 370,613 + SMa0684 0.50 +0.1 370,613 + SMa0684 0.50 +3.3
Or see this region's nucleotide sequence