Strain Fitness in Sinorhizobium meliloti 1021 around SMa0682

Experiment: Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0680 and SMa0682 are separated by 1 nucleotidesSMa0682 and SMa0683 are separated by 205 nucleotides SMa0680: SMa0680 - amino acid (ornithine, lysine, arginine) decarboxylase, at 364,053 to 366,401 SMa0680 SMa0682: SMa0682 - decarboxylase (lysine, ornithine, arginine), at 366,403 to 368,673 SMa0682 SMa0683: SMa0683 - Cation efflux protein, at 368,879 to 369,805 SMa0683 Position (kb) 366 367 368 369Strain fitness (log2 ratio) -2 -1 0 1 2at 365.405 kb on - strand, within SMa0680at 365.405 kb on - strand, within SMa0680at 365.405 kb on - strand, within SMa0680at 365.408 kb on + strand, within SMa0680at 365.409 kb on - strand, within SMa0680at 365.420 kb on - strand, within SMa0680at 365.420 kb on - strand, within SMa0680at 365.691 kb on - strand, within SMa0680at 365.731 kb on + strand, within SMa0680at 365.799 kb on + strand, within SMa0680at 365.799 kb on + strand, within SMa0680at 365.864 kb on - strand, within SMa0680at 365.956 kb on + strand, within SMa0680at 365.957 kb on - strand, within SMa0680at 366.034 kb on + strand, within SMa0680at 366.035 kb on - strand, within SMa0680at 366.222 kb on - strandat 366.223 kb on + strandat 366.223 kb on + strandat 366.223 kb on + strandat 366.223 kb on + strandat 366.450 kb on - strandat 366.536 kb on + strandat 366.537 kb on - strandat 366.545 kb on + strandat 366.545 kb on + strandat 366.545 kb on + strandat 366.546 kb on - strandat 366.546 kb on - strandat 366.615 kb on - strandat 366.619 kb on + strandat 366.619 kb on + strandat 366.620 kb on - strandat 366.620 kb on - strandat 366.780 kb on - strand, within SMa0682at 366.828 kb on - strand, within SMa0682at 366.828 kb on - strand, within SMa0682at 366.890 kb on + strand, within SMa0682at 366.891 kb on - strand, within SMa0682at 366.891 kb on - strand, within SMa0682at 366.891 kb on - strand, within SMa0682at 366.891 kb on - strand, within SMa0682at 366.977 kb on + strand, within SMa0682at 367.312 kb on + strand, within SMa0682at 367.379 kb on + strand, within SMa0682at 367.581 kb on - strand, within SMa0682at 367.602 kb on - strand, within SMa0682at 367.669 kb on + strand, within SMa0682at 367.669 kb on + strand, within SMa0682at 367.670 kb on - strand, within SMa0682at 367.676 kb on + strand, within SMa0682at 367.692 kb on - strand, within SMa0682at 367.692 kb on - strand, within SMa0682at 367.726 kb on - strand, within SMa0682at 367.845 kb on - strand, within SMa0682at 367.867 kb on - strand, within SMa0682at 367.885 kb on - strand, within SMa0682at 367.890 kb on + strand, within SMa0682at 367.890 kb on + strand, within SMa0682at 367.890 kb on + strand, within SMa0682at 367.891 kb on - strand, within SMa0682at 367.891 kb on - strand, within SMa0682at 367.891 kb on - strand, within SMa0682at 367.935 kb on + strand, within SMa0682at 367.953 kb on + strand, within SMa0682at 368.006 kb on - strand, within SMa0682at 368.123 kb on + strand, within SMa0682at 368.123 kb on + strand, within SMa0682at 368.370 kb on + strand, within SMa0682at 368.370 kb on + strand, within SMa0682at 368.371 kb on - strand, within SMa0682at 368.458 kb on - strandat 368.537 kb on + strandat 368.567 kb on - strandat 368.628 kb on - strandat 368.663 kb on + strandat 368.664 kb on - strandat 368.722 kb on - strandat 368.769 kb on + strandat 368.785 kb on + strandat 368.785 kb on + strandat 368.786 kb on - strandat 368.905 kb on + strandat 368.947 kb on + strandat 368.947 kb on + strandat 368.948 kb on - strandat 369.176 kb on - strand, within SMa0683at 369.222 kb on - strand, within SMa0683at 369.222 kb on - strand, within SMa0683at 369.240 kb on + strand, within SMa0683at 369.242 kb on + strand, within SMa0683at 369.243 kb on - strand, within SMa0683at 369.435 kb on + strand, within SMa0683at 369.533 kb on - strand, within SMa0683at 369.626 kb on + strand, within SMa0683at 369.626 kb on + strand, within SMa0683

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM
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365,405 - SMa0680 0.58 -0.4
365,405 - SMa0680 0.58 -0.3
365,405 - SMa0680 0.58 +0.5
365,408 + SMa0680 0.58 -2.4
365,409 - SMa0680 0.58 -0.8
365,420 - SMa0680 0.58 -1.0
365,420 - SMa0680 0.58 +0.2
365,691 - SMa0680 0.70 -1.9
365,731 + SMa0680 0.71 -0.7
365,799 + SMa0680 0.74 -0.2
365,799 + SMa0680 0.74 -0.2
365,864 - SMa0680 0.77 -1.1
365,956 + SMa0680 0.81 -2.6
365,957 - SMa0680 0.81 +0.0
366,034 + SMa0680 0.84 +0.1
366,035 - SMa0680 0.84 +0.1
366,222 - +0.9
366,223 + -0.5
366,223 + -0.6
366,223 + -0.0
366,223 + -1.7
366,450 - -0.3
366,536 + +0.4
366,537 - -0.3
366,545 + +0.4
366,545 + -1.6
366,545 + -0.4
366,546 - +0.9
366,546 - -0.2
366,615 - +0.2
366,619 + -0.5
366,619 + -1.9
366,620 - -0.2
366,620 - +0.1
366,780 - SMa0682 0.17 +1.1
366,828 - SMa0682 0.19 +0.1
366,828 - SMa0682 0.19 -0.1
366,890 + SMa0682 0.21 -1.9
366,891 - SMa0682 0.21 +0.0
366,891 - SMa0682 0.21 -1.0
366,891 - SMa0682 0.21 -0.6
366,891 - SMa0682 0.21 -2.7
366,977 + SMa0682 0.25 -0.9
367,312 + SMa0682 0.40 -0.4
367,379 + SMa0682 0.43 -0.3
367,581 - SMa0682 0.52 -1.2
367,602 - SMa0682 0.53 +0.9
367,669 + SMa0682 0.56 -0.5
367,669 + SMa0682 0.56 +0.7
367,670 - SMa0682 0.56 -0.3
367,676 + SMa0682 0.56 -0.0
367,692 - SMa0682 0.57 -0.8
367,692 - SMa0682 0.57 -0.4
367,726 - SMa0682 0.58 -1.8
367,845 - SMa0682 0.63 -1.5
367,867 - SMa0682 0.64 -1.9
367,885 - SMa0682 0.65 -1.7
367,890 + SMa0682 0.65 -0.5
367,890 + SMa0682 0.65 +1.8
367,890 + SMa0682 0.65 +0.5
367,891 - SMa0682 0.66 -0.9
367,891 - SMa0682 0.66 -0.4
367,891 - SMa0682 0.66 +0.4
367,935 + SMa0682 0.67 -0.5
367,953 + SMa0682 0.68 -0.9
368,006 - SMa0682 0.71 -0.0
368,123 + SMa0682 0.76 +0.3
368,123 + SMa0682 0.76 -1.0
368,370 + SMa0682 0.87 -0.4
368,370 + SMa0682 0.87 -0.2
368,371 - SMa0682 0.87 +0.6
368,458 - -1.1
368,537 + -0.4
368,567 - +0.6
368,628 - -0.3
368,663 + -1.5
368,664 - -0.3
368,722 - -0.1
368,769 + +0.2
368,785 + -0.5
368,785 + +0.9
368,786 - -0.3
368,905 + -0.3
368,947 + +1.4
368,947 + +0.6
368,948 - -1.8
369,176 - SMa0683 0.32 +1.1
369,222 - SMa0683 0.37 +1.0
369,222 - SMa0683 0.37 +0.8
369,240 + SMa0683 0.39 -1.5
369,242 + SMa0683 0.39 +1.4
369,243 - SMa0683 0.39 -1.4
369,435 + SMa0683 0.60 -0.0
369,533 - SMa0683 0.71 +0.0
369,626 + SMa0683 0.81 +0.8
369,626 + SMa0683 0.81 -2.6

Or see this region's nucleotide sequence