Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0636 and SMa0637 are separated by 439 nucleotides SMa0637 and SMa0638 overlap by 4 nucleotides SMa0638 and SMa0639 are separated by 404 nucleotides
SMa0636: SMa0636 - hypothetical protein, at 341,499 to 342,152
SMa0636
SMa0637: SMa0637 - hypothetical protein, at 342,592 to 342,981
SMa0637
SMa0638: SMa0638 - hypothetical protein, at 342,978 to 343,235
SMa0638
SMa0639: SMa0639 - hypothetical protein, at 343,640 to 344,044
SMa0639
Position (kb) 342
343 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 341.848 kb on + strand, within SMa0636 at 341.849 kb on - strand, within SMa0636 at 341.869 kb on + strand, within SMa0636 at 341.869 kb on + strand, within SMa0636 at 341.869 kb on + strand, within SMa0636 at 342.142 kb on - strand at 342.254 kb on + strand at 342.269 kb on + strand at 342.271 kb on + strand at 342.272 kb on - strand at 342.309 kb on + strand at 342.310 kb on - strand at 342.402 kb on - strand at 342.446 kb on + strand at 342.446 kb on + strand at 342.447 kb on - strand at 342.447 kb on - strand at 342.508 kb on + strand at 342.556 kb on + strand at 342.556 kb on + strand at 342.628 kb on + strand at 342.726 kb on - strand, within SMa0637 at 342.727 kb on + strand, within SMa0637 at 342.727 kb on + strand, within SMa0637 at 342.727 kb on + strand, within SMa0637 at 342.727 kb on + strand, within SMa0637 at 342.727 kb on + strand, within SMa0637 at 342.727 kb on + strand, within SMa0637 at 342.728 kb on - strand, within SMa0637 at 342.728 kb on - strand, within SMa0637 at 342.728 kb on - strand, within SMa0637 at 342.873 kb on + strand, within SMa0637 at 342.874 kb on - strand, within SMa0637 at 342.932 kb on + strand, within SMa0637 at 343.036 kb on - strand, within SMa0638 at 343.180 kb on - strand, within SMa0638 at 343.363 kb on - strand at 343.446 kb on + strand at 343.446 kb on + strand at 343.447 kb on - strand at 343.447 kb on - strand at 343.519 kb on + strand at 343.519 kb on + strand at 343.571 kb on + strand at 343.579 kb on - strand at 343.583 kb on - strand at 343.596 kb on - strand at 343.683 kb on + strand, within SMa0639 at 343.683 kb on + strand, within SMa0639 at 343.684 kb on - strand, within SMa0639 at 343.687 kb on + strand, within SMa0639 at 343.687 kb on + strand, within SMa0639 at 343.688 kb on - strand, within SMa0639 at 343.688 kb on - strand, within SMa0639 at 343.688 kb on - strand, within SMa0639 at 343.688 kb on - strand at 343.688 kb on - strand, within SMa0639 at 343.716 kb on + strand, within SMa0639 at 343.756 kb on + strand, within SMa0639 at 343.757 kb on - strand, within SMa0639 at 343.757 kb on - strand, within SMa0639 at 343.757 kb on - strand, within SMa0639 at 343.811 kb on + strand, within SMa0639 at 343.852 kb on - strand, within SMa0639 at 343.965 kb on - strand, within SMa0639 at 343.965 kb on - strand, within SMa0639
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 341,848 + SMa0636 0.53 +1.8 341,849 - SMa0636 0.54 +0.1 341,869 + SMa0636 0.57 -1.1 341,869 + SMa0636 0.57 +1.3 341,869 + SMa0636 0.57 -0.3 342,142 - -0.1 342,254 + +1.6 342,269 + +0.3 342,271 + -0.3 342,272 - -0.2 342,309 + -0.3 342,310 - +0.8 342,402 - -2.9 342,446 + +1.7 342,446 + -0.7 342,447 - -0.7 342,447 - -1.0 342,508 + -2.1 342,556 + -0.2 342,556 + -1.3 342,628 + +0.3 342,726 - SMa0637 0.34 -0.2 342,727 + SMa0637 0.35 +0.5 342,727 + SMa0637 0.35 +0.3 342,727 + SMa0637 0.35 +1.0 342,727 + SMa0637 0.35 -2.2 342,727 + SMa0637 0.35 +0.1 342,727 + SMa0637 0.35 -0.5 342,728 - SMa0637 0.35 -1.2 342,728 - SMa0637 0.35 +0.2 342,728 - SMa0637 0.35 +1.8 342,873 + SMa0637 0.72 +0.0 342,874 - SMa0637 0.72 -1.3 342,932 + SMa0637 0.87 -0.7 343,036 - SMa0638 0.22 +2.1 343,180 - SMa0638 0.78 -0.3 343,363 - -0.5 343,446 + -1.8 343,446 + -1.3 343,447 - -0.3 343,447 - +0.5 343,519 + -0.6 343,519 + -0.6 343,571 + +0.7 343,579 - +0.4 343,583 - -0.1 343,596 - +1.3 343,683 + SMa0639 0.11 -0.1 343,683 + SMa0639 0.11 +0.2 343,684 - SMa0639 0.11 +1.2 343,687 + SMa0639 0.12 +0.1 343,687 + SMa0639 0.12 -2.5 343,688 - SMa0639 0.12 -1.9 343,688 - SMa0639 0.12 +0.2 343,688 - SMa0639 0.12 -0.7 343,688 - +4.5 343,688 - SMa0639 0.12 +0.2 343,716 + SMa0639 0.19 -1.0 343,756 + SMa0639 0.29 +0.3 343,757 - SMa0639 0.29 +1.5 343,757 - SMa0639 0.29 +1.2 343,757 - SMa0639 0.29 -0.2 343,811 + SMa0639 0.42 -0.8 343,852 - SMa0639 0.52 +1.0 343,965 - SMa0639 0.80 +1.7 343,965 - SMa0639 0.80 -1.0
Or see this region's nucleotide sequence