Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0585 and SMa0590 are separated by 817 nucleotides SMa0590 and SMa0591 are separated by 28 nucleotides SMa0591 and SMa0592 are separated by 293 nucleotides
SMa0585: SMa0585 - nitrate ABC transporter substrate-binding protein, at 312,195 to 313,487
SMa0585
SMa0590: SMa0590 - hypothetical protein, at 314,305 to 314,763
SMa0590
SMa0591: SMa0591 - transposase, fragment, at 314,792 to 314,986
SMa0591
SMa0592: SMa0592 - hypothetical protein, at 315,280 to 316,452
SMa0592
Position (kb) 314
315 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 313.803 kb on + strand at 313.804 kb on - strand at 313.907 kb on - strand at 313.907 kb on - strand at 314.033 kb on + strand at 314.033 kb on + strand at 314.033 kb on + strand at 314.033 kb on + strand at 314.034 kb on - strand at 314.037 kb on + strand at 314.037 kb on + strand at 314.038 kb on - strand at 314.046 kb on + strand at 314.241 kb on + strand at 314.244 kb on + strand at 314.244 kb on + strand at 314.244 kb on + strand at 314.244 kb on + strand at 314.244 kb on + strand at 314.245 kb on - strand at 314.245 kb on - strand at 314.300 kb on + strand at 314.300 kb on + strand at 314.301 kb on - strand at 314.301 kb on - strand at 314.301 kb on - strand at 314.367 kb on + strand, within SMa0590 at 314.368 kb on - strand, within SMa0590 at 314.368 kb on - strand, within SMa0590 at 314.368 kb on - strand, within SMa0590 at 314.368 kb on - strand, within SMa0590 at 314.372 kb on - strand, within SMa0590 at 314.528 kb on + strand, within SMa0590 at 314.529 kb on - strand, within SMa0590 at 314.640 kb on + strand, within SMa0590 at 314.662 kb on - strand, within SMa0590 at 314.662 kb on - strand, within SMa0590 at 314.720 kb on - strand at 314.751 kb on - strand at 314.762 kb on - strand at 314.791 kb on + strand at 314.791 kb on + strand at 314.792 kb on - strand at 314.814 kb on - strand, within SMa0591 at 314.876 kb on + strand, within SMa0591 at 314.876 kb on + strand, within SMa0591 at 314.876 kb on + strand, within SMa0591 at 314.877 kb on - strand, within SMa0591 at 314.877 kb on - strand, within SMa0591 at 314.877 kb on - strand, within SMa0591 at 314.925 kb on - strand, within SMa0591 at 314.925 kb on - strand, within SMa0591 at 314.948 kb on + strand, within SMa0591 at 315.179 kb on + strand at 315.219 kb on + strand at 315.220 kb on - strand at 315.220 kb on - strand at 315.229 kb on + strand at 315.259 kb on - strand at 315.274 kb on - strand at 315.486 kb on - strand, within SMa0592 at 315.513 kb on + strand, within SMa0592 at 315.513 kb on + strand, within SMa0592 at 315.513 kb on + strand, within SMa0592 at 315.513 kb on + strand, within SMa0592 at 315.514 kb on - strand, within SMa0592 at 315.514 kb on - strand, within SMa0592 at 315.514 kb on - strand, within SMa0592 at 315.550 kb on + strand, within SMa0592 at 315.733 kb on + strand, within SMa0592 at 315.733 kb on + strand, within SMa0592 at 315.733 kb on + strand, within SMa0592 at 315.733 kb on + strand, within SMa0592 at 315.734 kb on - strand, within SMa0592 at 315.736 kb on - strand, within SMa0592 at 315.762 kb on - strand, within SMa0592
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 313,803 + -0.6 313,804 - -0.1 313,907 - +0.5 313,907 - +1.4 314,033 + -0.0 314,033 + +0.0 314,033 + +1.1 314,033 + -1.4 314,034 - -0.2 314,037 + +0.0 314,037 + -2.2 314,038 - +0.1 314,046 + +0.2 314,241 + +1.9 314,244 + +0.3 314,244 + +1.1 314,244 + -2.3 314,244 + -0.2 314,244 + +0.3 314,245 - +1.9 314,245 - -0.2 314,300 + -0.2 314,300 + -1.6 314,301 - +0.2 314,301 - -0.2 314,301 - -0.8 314,367 + SMa0590 0.14 -2.1 314,368 - SMa0590 0.14 +0.3 314,368 - SMa0590 0.14 +0.0 314,368 - SMa0590 0.14 +0.0 314,368 - SMa0590 0.14 -0.3 314,372 - SMa0590 0.15 -0.4 314,528 + SMa0590 0.49 +0.9 314,529 - SMa0590 0.49 +0.4 314,640 + SMa0590 0.73 -1.7 314,662 - SMa0590 0.78 -0.7 314,662 - SMa0590 0.78 -0.5 314,720 - +0.0 314,751 - -0.0 314,762 - -0.3 314,791 + +1.4 314,791 + +0.1 314,792 - +0.2 314,814 - SMa0591 0.11 +1.5 314,876 + SMa0591 0.43 -2.1 314,876 + SMa0591 0.43 +0.4 314,876 + SMa0591 0.43 +0.4 314,877 - SMa0591 0.44 +2.9 314,877 - SMa0591 0.44 +0.9 314,877 - SMa0591 0.44 -0.2 314,925 - SMa0591 0.68 +1.2 314,925 - SMa0591 0.68 -1.0 314,948 + SMa0591 0.80 +0.7 315,179 + -0.5 315,219 + -2.0 315,220 - +0.7 315,220 - +0.2 315,229 + -1.7 315,259 - +1.8 315,274 - -0.9 315,486 - SMa0592 0.18 +0.4 315,513 + SMa0592 0.20 -0.5 315,513 + SMa0592 0.20 -1.5 315,513 + SMa0592 0.20 +0.8 315,513 + SMa0592 0.20 +0.2 315,514 - SMa0592 0.20 -1.7 315,514 - SMa0592 0.20 +1.0 315,514 - SMa0592 0.20 +0.5 315,550 + SMa0592 0.23 -0.8 315,733 + SMa0592 0.39 +0.4 315,733 + SMa0592 0.39 -2.0 315,733 + SMa0592 0.39 -2.9 315,733 + SMa0592 0.39 -3.5 315,734 - SMa0592 0.39 -0.3 315,736 - SMa0592 0.39 -0.4 315,762 - SMa0592 0.41 -0.5
Or see this region's nucleotide sequence