Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0514 and SMa0516 overlap by 4 nucleotides SMa0516 and SMa0518 overlap by 4 nucleotides SMa0518 and SMa0520 are separated by 358 nucleotides
SMa0514: SMa0514 - gluconate kinase, at 278,603 to 279,121
SMa0514
SMa0516: SMa0516 - hypothetical protein, at 279,118 to 280,005
SMa0516
SMa0518: SMa0518 - hypothetical protein, at 280,002 to 280,334
SMa0518
SMa0520: SMa0520 - RpiR family transcriptional regulator, at 280,693 to 281,535
SMa0520
Position (kb) 280
281 Strain fitness (log2 ratio) -1
0
1
2
3 at 279.298 kb on + strand, within SMa0516 at 279.299 kb on - strand, within SMa0516 at 279.299 kb on - strand, within SMa0516 at 279.299 kb on - strand, within SMa0516 at 279.305 kb on + strand, within SMa0516 at 279.306 kb on - strand, within SMa0516 at 279.592 kb on + strand, within SMa0516 at 279.592 kb on + strand, within SMa0516 at 279.600 kb on + strand, within SMa0516 at 279.647 kb on + strand, within SMa0516 at 279.648 kb on - strand, within SMa0516 at 279.648 kb on - strand, within SMa0516 at 279.648 kb on - strand, within SMa0516 at 279.698 kb on + strand, within SMa0516 at 279.775 kb on + strand, within SMa0516 at 279.776 kb on - strand, within SMa0516 at 279.776 kb on - strand, within SMa0516 at 279.776 kb on - strand, within SMa0516 at 279.987 kb on + strand at 280.168 kb on + strand, within SMa0518 at 280.191 kb on + strand, within SMa0518 at 280.191 kb on + strand, within SMa0518 at 280.191 kb on + strand, within SMa0518 at 280.192 kb on - strand, within SMa0518 at 280.373 kb on + strand at 280.487 kb on + strand at 280.487 kb on + strand at 280.487 kb on + strand at 280.487 kb on + strand at 280.487 kb on + strand at 280.487 kb on + strand at 280.488 kb on - strand at 280.488 kb on - strand at 280.488 kb on - strand at 280.488 kb on - strand at 280.533 kb on + strand at 280.560 kb on + strand at 280.667 kb on - strand at 280.667 kb on - strand at 280.669 kb on - strand at 280.719 kb on + strand at 280.719 kb on + strand at 280.729 kb on - strand at 280.879 kb on + strand, within SMa0520 at 280.880 kb on - strand, within SMa0520 at 280.880 kb on - strand, within SMa0520 at 280.950 kb on + strand, within SMa0520 at 280.951 kb on - strand, within SMa0520 at 281.033 kb on - strand, within SMa0520 at 281.033 kb on - strand, within SMa0520 at 281.187 kb on + strand, within SMa0520 at 281.188 kb on - strand, within SMa0520 at 281.273 kb on - strand, within SMa0520 at 281.313 kb on + strand, within SMa0520 at 281.314 kb on - strand, within SMa0520
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 279,298 + SMa0516 0.20 +3.0 279,299 - SMa0516 0.20 +0.0 279,299 - SMa0516 0.20 -0.8 279,299 - SMa0516 0.20 -0.0 279,305 + SMa0516 0.21 -1.1 279,306 - SMa0516 0.21 +0.6 279,592 + SMa0516 0.53 -0.1 279,592 + SMa0516 0.53 -0.5 279,600 + SMa0516 0.54 +0.3 279,647 + SMa0516 0.60 +0.8 279,648 - SMa0516 0.60 -1.3 279,648 - SMa0516 0.60 +0.5 279,648 - SMa0516 0.60 -0.2 279,698 + SMa0516 0.65 -1.2 279,775 + SMa0516 0.74 -0.5 279,776 - SMa0516 0.74 +0.6 279,776 - SMa0516 0.74 +0.0 279,776 - SMa0516 0.74 -0.6 279,987 + -1.3 280,168 + SMa0518 0.50 +0.8 280,191 + SMa0518 0.57 +0.8 280,191 + SMa0518 0.57 +0.9 280,191 + SMa0518 0.57 +0.9 280,192 - SMa0518 0.57 +0.7 280,373 + -0.4 280,487 + +0.2 280,487 + +0.2 280,487 + -0.5 280,487 + +0.8 280,487 + +0.4 280,487 + +0.4 280,488 - -0.3 280,488 - -1.6 280,488 - +0.2 280,488 - -0.7 280,533 + +0.3 280,560 + +0.3 280,667 - +1.9 280,667 - +0.4 280,669 - +1.5 280,719 + -1.5 280,719 + -1.1 280,729 - +0.8 280,879 + SMa0520 0.22 -0.4 280,880 - SMa0520 0.22 -1.1 280,880 - SMa0520 0.22 +0.7 280,950 + SMa0520 0.30 -0.9 280,951 - SMa0520 0.31 +0.3 281,033 - SMa0520 0.40 -0.0 281,033 - SMa0520 0.40 +0.7 281,187 + SMa0520 0.59 +1.2 281,188 - SMa0520 0.59 +0.3 281,273 - SMa0520 0.69 +0.6 281,313 + SMa0520 0.74 +0.2 281,314 - SMa0520 0.74 -0.2
Or see this region's nucleotide sequence