Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0398 and SMa0400 are separated by 3 nucleotides SMa0400 and SMa0402 are separated by 62 nucleotides SMa0402 and SMa0403 overlap by 53 nucleotides
SMa0398: SMa0398 - histidinol dehydrogenase, at 215,421 to 216,791
SMa0398
SMa0400: SMa0400 - Dehydrogenase, Zn-dependent, at 216,795 to 217,808
SMa0400
SMa0402: SMa0402 - GntR family transcriptional regulator, at 217,871 to 218,602
SMa0402
SMa0403: SMa0403 - hypothetical protein, at 218,550 to 219,938
SMa0403
Position (kb) 216
217
218 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 215.895 kb on - strand, within SMa0398 at 216.064 kb on - strand at 216.276 kb on + strand, within SMa0398 at 216.277 kb on - strand, within SMa0398 at 216.433 kb on - strand, within SMa0398 at 216.543 kb on - strand, within SMa0398 at 216.543 kb on - strand, within SMa0398 at 216.720 kb on + strand at 216.720 kb on + strand at 216.720 kb on + strand at 216.771 kb on + strand at 216.928 kb on - strand, within SMa0400 at 216.928 kb on - strand, within SMa0400 at 216.928 kb on - strand, within SMa0400 at 217.346 kb on - strand, within SMa0400 at 217.503 kb on - strand, within SMa0400 at 217.578 kb on - strand, within SMa0400 at 217.746 kb on + strand at 217.877 kb on - strand at 217.877 kb on - strand at 217.914 kb on + strand at 217.914 kb on + strand at 217.915 kb on - strand at 218.161 kb on + strand, within SMa0402 at 218.316 kb on - strand, within SMa0402 at 218.376 kb on - strand, within SMa0402 at 218.376 kb on - strand, within SMa0402 at 218.381 kb on + strand, within SMa0402 at 218.381 kb on + strand, within SMa0402 at 218.549 kb on + strand at 218.549 kb on + strand at 218.550 kb on - strand at 218.550 kb on - strand at 218.550 kb on - strand at 218.614 kb on - strand at 218.614 kb on - strand at 218.614 kb on - strand at 218.678 kb on - strand at 218.787 kb on + strand, within SMa0403 at 218.787 kb on + strand, within SMa0403 at 218.788 kb on - strand, within SMa0403
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 215,895 - SMa0398 0.35 +0.1 216,064 - +0.0 216,276 + SMa0398 0.62 +0.2 216,277 - SMa0398 0.62 -0.7 216,433 - SMa0398 0.74 +0.8 216,543 - SMa0398 0.82 -0.1 216,543 - SMa0398 0.82 -0.7 216,720 + -2.1 216,720 + +1.5 216,720 + -0.8 216,771 + +0.7 216,928 - SMa0400 0.13 -0.2 216,928 - SMa0400 0.13 -0.5 216,928 - SMa0400 0.13 +0.2 217,346 - SMa0400 0.54 -1.4 217,503 - SMa0400 0.70 -0.2 217,578 - SMa0400 0.77 +0.1 217,746 + -1.1 217,877 - -0.6 217,877 - -0.3 217,914 + -0.5 217,914 + +0.0 217,915 - +0.2 218,161 + SMa0402 0.40 -1.0 218,316 - SMa0402 0.61 -1.2 218,376 - SMa0402 0.69 -2.6 218,376 - SMa0402 0.69 +0.8 218,381 + SMa0402 0.70 +0.9 218,381 + SMa0402 0.70 +0.3 218,549 + +0.5 218,549 + -0.3 218,550 - -1.9 218,550 - +0.4 218,550 - -2.6 218,614 - +0.0 218,614 - +0.0 218,614 - +2.5 218,678 - +0.9 218,787 + SMa0403 0.17 -2.0 218,787 + SMa0403 0.17 -3.3 218,788 - SMa0403 0.17 +1.2
Or see this region's nucleotide sequence