Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21689

Experiment: Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21494 and SM_b21689 are separated by 34 nucleotidesSM_b21689 and SM_b21495 are separated by 283 nucleotidesSM_b21495 and SM_b21496 overlap by 4 nucleotides SM_b21494: SM_b21494 - ornithine cyclodeaminase, at 1,415,494 to 1,416,561 _b21494 SM_b21689: SM_b21689 - hypothetical protein, at 1,416,596 to 1,416,778 _b21689 SM_b21495: SM_b21495 - protease, at 1,417,062 to 1,417,565 _b21495 SM_b21496: SM_b21496 - protease, at 1,417,562 to 1,418,203 _b21496 Position (kb) 1416 1417Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1415.719 kb on + strand, within SM_b21494at 1415.720 kb on - strand, within SM_b21494at 1415.731 kb on + strand, within SM_b21494at 1415.731 kb on + strand, within SM_b21494at 1415.732 kb on - strand, within SM_b21494at 1415.732 kb on - strand, within SM_b21494at 1415.829 kb on + strand, within SM_b21494at 1416.002 kb on - strand, within SM_b21494at 1416.124 kb on - strand, within SM_b21494at 1416.183 kb on + strand, within SM_b21494at 1416.184 kb on - strand, within SM_b21494at 1416.184 kb on - strand, within SM_b21494at 1416.224 kb on + strand, within SM_b21494at 1416.704 kb on + strand, within SM_b21689at 1416.705 kb on - strand, within SM_b21689at 1416.738 kb on + strand, within SM_b21689at 1416.886 kb on - strandat 1416.933 kb on + strandat 1417.281 kb on + strand, within SM_b21495at 1417.282 kb on - strand, within SM_b21495at 1417.335 kb on - strand, within SM_b21495at 1417.441 kb on - strand, within SM_b21495at 1417.441 kb on - strand, within SM_b21495at 1417.491 kb on - strand, within SM_b21495at 1417.493 kb on - strand, within SM_b21495at 1417.500 kb on + strand, within SM_b21495at 1417.500 kb on + strand, within SM_b21495at 1417.500 kb on + strand, within SM_b21495at 1417.501 kb on - strand, within SM_b21495at 1417.528 kb on - strandat 1417.533 kb on + strandat 1417.595 kb on + strandat 1417.595 kb on + strandat 1417.595 kb on + strandat 1417.595 kb on + strandat 1417.595 kb on + strandat 1417.596 kb on - strandat 1417.596 kb on - strandat 1417.596 kb on - strandat 1417.596 kb on - strandat 1417.596 kb on - strandat 1417.596 kb on - strandat 1417.596 kb on - strandat 1417.618 kb on + strandat 1417.635 kb on - strand, within SM_b21496at 1417.745 kb on + strand, within SM_b21496at 1417.761 kb on - strand, within SM_b21496at 1417.762 kb on + strand, within SM_b21496at 1417.762 kb on + strand, within SM_b21496at 1417.763 kb on - strand, within SM_b21496

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM
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1,415,719 + SM_b21494 0.21 +1.8
1,415,720 - SM_b21494 0.21 -2.0
1,415,731 + SM_b21494 0.22 -0.7
1,415,731 + SM_b21494 0.22 -0.0
1,415,732 - SM_b21494 0.22 -0.3
1,415,732 - SM_b21494 0.22 -0.7
1,415,829 + SM_b21494 0.31 +0.7
1,416,002 - SM_b21494 0.48 +1.4
1,416,124 - SM_b21494 0.59 +1.0
1,416,183 + SM_b21494 0.65 +0.1
1,416,184 - SM_b21494 0.65 -1.1
1,416,184 - SM_b21494 0.65 -0.1
1,416,224 + SM_b21494 0.68 +0.4
1,416,704 + SM_b21689 0.59 -0.4
1,416,705 - SM_b21689 0.60 +1.3
1,416,738 + SM_b21689 0.78 +2.8
1,416,886 - -0.4
1,416,933 + +2.3
1,417,281 + SM_b21495 0.43 -0.0
1,417,282 - SM_b21495 0.44 +0.8
1,417,335 - SM_b21495 0.54 -0.3
1,417,441 - SM_b21495 0.75 +0.5
1,417,441 - SM_b21495 0.75 -1.2
1,417,491 - SM_b21495 0.85 +1.0
1,417,493 - SM_b21495 0.86 -0.0
1,417,500 + SM_b21495 0.87 +0.4
1,417,500 + SM_b21495 0.87 +2.0
1,417,500 + SM_b21495 0.87 -0.8
1,417,501 - SM_b21495 0.87 -1.2
1,417,528 - -1.4
1,417,533 + +0.3
1,417,595 + -1.5
1,417,595 + +2.5
1,417,595 + +0.3
1,417,595 + +0.6
1,417,595 + +0.2
1,417,596 - -1.0
1,417,596 - +0.5
1,417,596 - +0.3
1,417,596 - -0.9
1,417,596 - +0.0
1,417,596 - -0.1
1,417,596 - -0.5
1,417,618 + -0.1
1,417,635 - SM_b21496 0.11 +0.4
1,417,745 + SM_b21496 0.29 +0.7
1,417,761 - SM_b21496 0.31 +1.6
1,417,762 + SM_b21496 0.31 -1.1
1,417,762 + SM_b21496 0.31 -0.5
1,417,763 - SM_b21496 0.31 +0.7

Or see this region's nucleotide sequence