Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20828 and SM_b21663 overlap by 4 nucleotides SM_b21663 and SM_b21664 are separated by 99 nucleotides SM_b21664 and SM_b21665 are separated by 57 nucleotides SM_b21665 and SM_b20829 are separated by 46 nucleotides
SM_b20828: SM_b20828 - hypothetical protein, at 618,428 to 618,703
_b20828
SM_b21663: SM_b21663 - hypothetical protein, at 618,700 to 619,116
_b21663
SM_b21664: SM_b21664 - hypothetical protein, at 619,216 to 619,485
_b21664
SM_b21665: SM_b21665 - hypothetical protein, at 619,543 to 619,899
_b21665
SM_b20829: SM_b20829 - secreted calcium-binding protein, at 619,946 to 621,625
_b20829
Position (kb) 619
620 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 618.789 kb on + strand, within SM_b21663 at 618.941 kb on + strand, within SM_b21663 at 618.954 kb on - strand, within SM_b21663 at 619.084 kb on + strand at 619.085 kb on - strand at 619.231 kb on + strand at 619.293 kb on - strand, within SM_b21664 at 619.402 kb on + strand, within SM_b21664 at 619.402 kb on + strand, within SM_b21664 at 619.402 kb on + strand, within SM_b21664 at 619.402 kb on + strand, within SM_b21664 at 619.403 kb on - strand, within SM_b21664 at 619.403 kb on - strand, within SM_b21664 at 619.435 kb on + strand, within SM_b21664 at 619.435 kb on + strand, within SM_b21664 at 619.435 kb on + strand, within SM_b21664 at 619.436 kb on - strand, within SM_b21664 at 619.436 kb on - strand, within SM_b21664 at 619.436 kb on - strand, within SM_b21664 at 619.436 kb on - strand, within SM_b21664 at 619.755 kb on + strand, within SM_b21665 at 619.756 kb on - strand, within SM_b21665 at 619.756 kb on - strand, within SM_b21665 at 619.892 kb on + strand at 619.893 kb on - strand at 619.935 kb on - strand at 619.978 kb on + strand at 619.978 kb on + strand at 619.979 kb on - strand at 620.067 kb on + strand at 620.123 kb on + strand, within SM_b20829 at 620.123 kb on + strand, within SM_b20829 at 620.124 kb on - strand, within SM_b20829 at 620.124 kb on - strand, within SM_b20829 at 620.124 kb on - strand, within SM_b20829 at 620.185 kb on + strand, within SM_b20829 at 620.186 kb on - strand, within SM_b20829 at 620.245 kb on + strand, within SM_b20829 at 620.246 kb on - strand, within SM_b20829 at 620.248 kb on + strand, within SM_b20829 at 620.288 kb on - strand, within SM_b20829 at 620.312 kb on + strand, within SM_b20829 at 620.312 kb on + strand, within SM_b20829 at 620.313 kb on - strand, within SM_b20829 at 620.421 kb on - strand, within SM_b20829 at 620.434 kb on + strand, within SM_b20829 at 620.435 kb on - strand, within SM_b20829 at 620.440 kb on + strand, within SM_b20829 at 620.441 kb on - strand, within SM_b20829 at 620.441 kb on - strand, within SM_b20829 at 620.473 kb on + strand, within SM_b20829 at 620.473 kb on + strand, within SM_b20829 at 620.473 kb on + strand at 620.474 kb on - strand, within SM_b20829 at 620.474 kb on - strand, within SM_b20829 at 620.551 kb on - strand, within SM_b20829 at 620.551 kb on - strand, within SM_b20829 at 620.561 kb on - strand, within SM_b20829 at 620.657 kb on + strand, within SM_b20829 at 620.657 kb on + strand, within SM_b20829 at 620.658 kb on - strand, within SM_b20829 at 620.660 kb on - strand, within SM_b20829 at 620.685 kb on - strand, within SM_b20829 at 620.758 kb on + strand, within SM_b20829 at 620.759 kb on - strand, within SM_b20829 at 620.765 kb on + strand, within SM_b20829 at 620.766 kb on - strand, within SM_b20829 at 620.796 kb on + strand, within SM_b20829 at 620.796 kb on + strand, within SM_b20829 at 620.846 kb on + strand, within SM_b20829 at 620.847 kb on - strand, within SM_b20829 at 620.847 kb on - strand, within SM_b20829
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 618,789 + SM_b21663 0.21 +0.2 618,941 + SM_b21663 0.58 -0.2 618,954 - SM_b21663 0.61 +0.8 619,084 + +0.8 619,085 - -0.9 619,231 + +0.2 619,293 - SM_b21664 0.29 -0.6 619,402 + SM_b21664 0.69 +1.1 619,402 + SM_b21664 0.69 +0.5 619,402 + SM_b21664 0.69 -0.6 619,402 + SM_b21664 0.69 +0.4 619,403 - SM_b21664 0.69 +1.2 619,403 - SM_b21664 0.69 +0.8 619,435 + SM_b21664 0.81 -0.6 619,435 + SM_b21664 0.81 +0.6 619,435 + SM_b21664 0.81 -2.1 619,436 - SM_b21664 0.81 -2.2 619,436 - SM_b21664 0.81 -0.5 619,436 - SM_b21664 0.81 +2.3 619,436 - SM_b21664 0.81 +0.9 619,755 + SM_b21665 0.59 -0.0 619,756 - SM_b21665 0.60 +0.0 619,756 - SM_b21665 0.60 -1.1 619,892 + +0.2 619,893 - -3.0 619,935 - -0.5 619,978 + -0.1 619,978 + +0.6 619,979 - +0.7 620,067 + -1.0 620,123 + SM_b20829 0.11 +0.6 620,123 + SM_b20829 0.11 +0.2 620,124 - SM_b20829 0.11 -0.0 620,124 - SM_b20829 0.11 +1.5 620,124 - SM_b20829 0.11 -0.9 620,185 + SM_b20829 0.14 -0.8 620,186 - SM_b20829 0.14 +0.2 620,245 + SM_b20829 0.18 +0.3 620,246 - SM_b20829 0.18 -0.6 620,248 + SM_b20829 0.18 -0.8 620,288 - SM_b20829 0.20 +0.5 620,312 + SM_b20829 0.22 -0.7 620,312 + SM_b20829 0.22 -0.1 620,313 - SM_b20829 0.22 -2.0 620,421 - SM_b20829 0.28 +1.3 620,434 + SM_b20829 0.29 +0.1 620,435 - SM_b20829 0.29 +0.2 620,440 + SM_b20829 0.29 +1.0 620,441 - SM_b20829 0.29 -2.2 620,441 - SM_b20829 0.29 -0.1 620,473 + SM_b20829 0.31 -0.4 620,473 + SM_b20829 0.31 -0.1 620,473 + +0.0 620,474 - SM_b20829 0.31 -0.7 620,474 - SM_b20829 0.31 -0.5 620,551 - SM_b20829 0.36 -0.9 620,551 - SM_b20829 0.36 +0.6 620,561 - SM_b20829 0.37 +0.8 620,657 + SM_b20829 0.42 -0.0 620,657 + SM_b20829 0.42 +0.2 620,658 - SM_b20829 0.42 -0.5 620,660 - SM_b20829 0.42 -1.5 620,685 - SM_b20829 0.44 -2.3 620,758 + SM_b20829 0.48 -0.6 620,759 - SM_b20829 0.48 -0.4 620,765 + SM_b20829 0.49 -1.3 620,766 - SM_b20829 0.49 -0.7 620,796 + SM_b20829 0.51 -2.2 620,796 + SM_b20829 0.51 -0.3 620,846 + SM_b20829 0.54 +0.9 620,847 - SM_b20829 0.54 +0.9 620,847 - SM_b20829 0.54 -1.1
Or see this region's nucleotide sequence