Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21630 and SM_b21631 are separated by 43 nucleotides SM_b21631 and SM_b21632 are separated by 119 nucleotides
SM_b21630: SM_b21630 - hypothetical protein, at 1,657,750 to 1,658,991
_b21630
SM_b21631: SM_b21631 - carboxynorspermidine decarboxylase, at 1,659,035 to 1,660,132
_b21631
SM_b21632: SM_b21632 - 3-hydroxyacyl-CoA dehydrogenase, at 1,660,252 to 1,661,568
_b21632
Position (kb)
1659
1660
1661 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1658.198 kb on + strand, within SM_b21630 at 1658.198 kb on + strand, within SM_b21630 at 1658.198 kb on + strand, within SM_b21630 at 1658.199 kb on - strand, within SM_b21630 at 1658.199 kb on - strand, within SM_b21630 at 1658.199 kb on - strand, within SM_b21630 at 1658.199 kb on - strand, within SM_b21630 at 1658.283 kb on + strand, within SM_b21630 at 1658.284 kb on - strand, within SM_b21630 at 1658.284 kb on - strand, within SM_b21630 at 1658.284 kb on - strand, within SM_b21630 at 1658.286 kb on - strand, within SM_b21630 at 1658.376 kb on - strand, within SM_b21630 at 1658.376 kb on - strand, within SM_b21630 at 1658.433 kb on - strand, within SM_b21630 at 1658.492 kb on + strand, within SM_b21630 at 1658.516 kb on + strand, within SM_b21630 at 1658.603 kb on + strand, within SM_b21630 at 1658.604 kb on - strand, within SM_b21630 at 1658.604 kb on - strand, within SM_b21630 at 1658.604 kb on - strand, within SM_b21630 at 1658.667 kb on + strand, within SM_b21630 at 1658.668 kb on - strand, within SM_b21630 at 1658.669 kb on + strand, within SM_b21630 at 1658.669 kb on + strand, within SM_b21630 at 1658.669 kb on + strand, within SM_b21630 at 1658.670 kb on - strand, within SM_b21630 at 1658.737 kb on + strand, within SM_b21630 at 1658.738 kb on - strand, within SM_b21630 at 1658.738 kb on - strand, within SM_b21630 at 1658.896 kb on - strand at 1658.896 kb on - strand at 1658.901 kb on + strand at 1658.901 kb on + strand at 1658.902 kb on - strand at 1658.902 kb on - strand at 1658.902 kb on - strand at 1658.911 kb on + strand at 1658.911 kb on + strand at 1658.911 kb on + strand at 1658.911 kb on + strand at 1658.911 kb on + strand at 1658.912 kb on - strand at 1658.912 kb on - strand at 1659.001 kb on + strand at 1659.001 kb on + strand at 1659.001 kb on + strand at 1659.012 kb on - strand at 1659.202 kb on + strand, within SM_b21631 at 1659.203 kb on - strand, within SM_b21631 at 1659.203 kb on - strand, within SM_b21631 at 1659.270 kb on + strand, within SM_b21631 at 1659.270 kb on + strand, within SM_b21631 at 1659.271 kb on - strand, within SM_b21631 at 1659.271 kb on - strand, within SM_b21631 at 1659.271 kb on - strand, within SM_b21631 at 1659.274 kb on + strand, within SM_b21631 at 1659.274 kb on + strand, within SM_b21631 at 1659.274 kb on + strand, within SM_b21631 at 1659.274 kb on + strand, within SM_b21631 at 1659.274 kb on + strand, within SM_b21631 at 1659.274 kb on + strand, within SM_b21631 at 1659.274 kb on + strand, within SM_b21631 at 1659.275 kb on - strand, within SM_b21631 at 1659.275 kb on - strand, within SM_b21631 at 1659.275 kb on - strand, within SM_b21631 at 1659.275 kb on - strand, within SM_b21631 at 1659.315 kb on + strand, within SM_b21631 at 1659.381 kb on + strand, within SM_b21631 at 1659.381 kb on + strand, within SM_b21631 at 1659.382 kb on - strand, within SM_b21631 at 1659.451 kb on - strand, within SM_b21631 at 1659.451 kb on - strand, within SM_b21631 at 1659.891 kb on + strand, within SM_b21631 at 1659.891 kb on + strand, within SM_b21631 at 1659.901 kb on + strand, within SM_b21631 at 1659.901 kb on + strand, within SM_b21631 at 1659.901 kb on + strand, within SM_b21631 at 1659.901 kb on + strand, within SM_b21631 at 1659.901 kb on + strand, within SM_b21631 at 1659.901 kb on + strand, within SM_b21631 at 1659.901 kb on + strand, within SM_b21631 at 1659.902 kb on - strand, within SM_b21631 at 1659.902 kb on - strand, within SM_b21631 at 1659.903 kb on + strand, within SM_b21631 at 1659.904 kb on - strand, within SM_b21631 at 1659.904 kb on - strand, within SM_b21631 at 1659.979 kb on + strand, within SM_b21631 at 1659.979 kb on + strand, within SM_b21631 at 1659.980 kb on - strand, within SM_b21631 at 1659.980 kb on - strand, within SM_b21631 at 1659.981 kb on + strand, within SM_b21631 at 1659.982 kb on - strand, within SM_b21631 at 1660.113 kb on + strand at 1660.114 kb on - strand at 1660.114 kb on - strand at 1660.114 kb on - strand at 1660.153 kb on - strand at 1660.153 kb on - strand at 1660.173 kb on - strand at 1660.616 kb on + strand, within SM_b21632 at 1660.622 kb on + strand, within SM_b21632 at 1660.909 kb on + strand, within SM_b21632 at 1661.087 kb on + strand, within SM_b21632
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 1,658,198 + SM_b21630 0.36 +0.0 1,658,198 + SM_b21630 0.36 +1.2 1,658,198 + SM_b21630 0.36 +1.3 1,658,199 - SM_b21630 0.36 +0.2 1,658,199 - SM_b21630 0.36 +0.4 1,658,199 - SM_b21630 0.36 +2.0 1,658,199 - SM_b21630 0.36 -1.6 1,658,283 + SM_b21630 0.43 -2.5 1,658,284 - SM_b21630 0.43 +0.8 1,658,284 - SM_b21630 0.43 +1.1 1,658,284 - SM_b21630 0.43 +0.3 1,658,286 - SM_b21630 0.43 +0.7 1,658,376 - SM_b21630 0.50 -0.5 1,658,376 - SM_b21630 0.50 +0.2 1,658,433 - SM_b21630 0.55 +0.2 1,658,492 + SM_b21630 0.60 -2.0 1,658,516 + SM_b21630 0.62 +1.3 1,658,603 + SM_b21630 0.69 -1.9 1,658,604 - SM_b21630 0.69 +0.6 1,658,604 - SM_b21630 0.69 +0.2 1,658,604 - SM_b21630 0.69 -0.6 1,658,667 + SM_b21630 0.74 -1.2 1,658,668 - SM_b21630 0.74 +0.9 1,658,669 + SM_b21630 0.74 +1.2 1,658,669 + SM_b21630 0.74 +0.7 1,658,669 + SM_b21630 0.74 -1.8 1,658,670 - SM_b21630 0.74 -0.9 1,658,737 + SM_b21630 0.79 +0.9 1,658,738 - SM_b21630 0.80 -0.5 1,658,738 - SM_b21630 0.80 +0.3 1,658,896 - +0.4 1,658,896 - +1.1 1,658,901 + +1.5 1,658,901 + +1.3 1,658,902 - -2.6 1,658,902 - -0.4 1,658,902 - -1.3 1,658,911 + +0.6 1,658,911 + +0.9 1,658,911 + -1.8 1,658,911 + +0.1 1,658,911 + -1.5 1,658,912 - +0.7 1,658,912 - -0.1 1,659,001 + -1.5 1,659,001 + +0.0 1,659,001 + +0.8 1,659,012 - +1.0 1,659,202 + SM_b21631 0.15 +0.5 1,659,203 - SM_b21631 0.15 +2.5 1,659,203 - SM_b21631 0.15 +1.2 1,659,270 + SM_b21631 0.21 -0.5 1,659,270 + SM_b21631 0.21 +0.5 1,659,271 - SM_b21631 0.21 +1.7 1,659,271 - SM_b21631 0.21 +1.8 1,659,271 - SM_b21631 0.21 +2.0 1,659,274 + SM_b21631 0.22 +2.1 1,659,274 + SM_b21631 0.22 +0.6 1,659,274 + SM_b21631 0.22 +1.3 1,659,274 + SM_b21631 0.22 -0.1 1,659,274 + SM_b21631 0.22 +0.1 1,659,274 + SM_b21631 0.22 -1.1 1,659,274 + SM_b21631 0.22 +0.6 1,659,275 - SM_b21631 0.22 +1.4 1,659,275 - SM_b21631 0.22 +2.4 1,659,275 - SM_b21631 0.22 +1.1 1,659,275 - SM_b21631 0.22 +1.7 1,659,315 + SM_b21631 0.26 +0.2 1,659,381 + SM_b21631 0.32 -1.0 1,659,381 + SM_b21631 0.32 -2.7 1,659,382 - SM_b21631 0.32 +2.3 1,659,451 - SM_b21631 0.38 +4.2 1,659,451 - SM_b21631 0.38 +1.1 1,659,891 + SM_b21631 0.78 -0.1 1,659,891 + SM_b21631 0.78 +0.6 1,659,901 + SM_b21631 0.79 +0.2 1,659,901 + SM_b21631 0.79 +0.4 1,659,901 + SM_b21631 0.79 +1.2 1,659,901 + SM_b21631 0.79 +3.4 1,659,901 + SM_b21631 0.79 +3.9 1,659,901 + SM_b21631 0.79 +0.3 1,659,901 + SM_b21631 0.79 +0.3 1,659,902 - SM_b21631 0.79 +0.9 1,659,902 - SM_b21631 0.79 +2.3 1,659,903 + SM_b21631 0.79 +1.1 1,659,904 - SM_b21631 0.79 +1.4 1,659,904 - SM_b21631 0.79 +0.8 1,659,979 + SM_b21631 0.86 +1.2 1,659,979 + SM_b21631 0.86 +1.0 1,659,980 - SM_b21631 0.86 +2.2 1,659,980 - SM_b21631 0.86 +1.3 1,659,981 + SM_b21631 0.86 +0.3 1,659,982 - SM_b21631 0.86 +2.2 1,660,113 + +0.9 1,660,114 - +1.0 1,660,114 - +0.8 1,660,114 - +0.7 1,660,153 - +1.0 1,660,153 - +1.1 1,660,173 - -0.2 1,660,616 + SM_b21632 0.28 +0.1 1,660,622 + SM_b21632 0.28 -0.5 1,660,909 + SM_b21632 0.50 +1.2 1,661,087 + SM_b21632 0.63 +0.0
Or see this region's nucleotide sequence