Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21581 and SM_b21582 are separated by 95 nucleotides SM_b21582 and SM_b21583 are separated by 17 nucleotides SM_b21583 and SM_b21584 are separated by 39 nucleotides
SM_b21581: SM_b21581 - glycosyltransferase, at 1,120,703 to 1,121,794
_b21581
SM_b21582: SM_b21582 - exoD-like membrane protein, at 1,121,890 to 1,122,522
_b21582
SM_b21583: SM_b21583 - hypothetical protein, at 1,122,540 to 1,122,902
_b21583
SM_b21584: SM_b21584 - hypothetical protein, at 1,122,942 to 1,123,799
_b21584
Position (kb) 1121
1122
1123 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1120.980 kb on + strand, within SM_b21581 at 1120.981 kb on - strand, within SM_b21581 at 1121.047 kb on + strand, within SM_b21581 at 1121.047 kb on + strand, within SM_b21581 at 1121.047 kb on + strand, within SM_b21581 at 1121.082 kb on - strand, within SM_b21581 at 1121.082 kb on - strand, within SM_b21581 at 1121.222 kb on + strand, within SM_b21581 at 1121.223 kb on - strand, within SM_b21581 at 1121.223 kb on - strand, within SM_b21581 at 1121.223 kb on - strand, within SM_b21581 at 1121.223 kb on - strand, within SM_b21581 at 1121.223 kb on - strand, within SM_b21581 at 1121.393 kb on + strand, within SM_b21581 at 1121.393 kb on + strand, within SM_b21581 at 1121.393 kb on + strand, within SM_b21581 at 1121.394 kb on - strand, within SM_b21581 at 1121.394 kb on - strand, within SM_b21581 at 1121.407 kb on - strand, within SM_b21581 at 1121.537 kb on + strand, within SM_b21581 at 1121.711 kb on + strand at 1121.802 kb on - strand at 1121.816 kb on - strand at 1121.962 kb on - strand, within SM_b21582 at 1121.962 kb on - strand, within SM_b21582 at 1122.177 kb on + strand, within SM_b21582 at 1122.177 kb on + strand, within SM_b21582 at 1122.178 kb on - strand, within SM_b21582 at 1122.389 kb on + strand, within SM_b21582 at 1122.402 kb on + strand, within SM_b21582 at 1122.534 kb on + strand at 1122.535 kb on - strand at 1122.535 kb on - strand at 1122.604 kb on + strand, within SM_b21583 at 1122.641 kb on - strand, within SM_b21583 at 1122.684 kb on - strand, within SM_b21583 at 1122.711 kb on - strand, within SM_b21583 at 1122.727 kb on - strand, within SM_b21583 at 1122.767 kb on + strand, within SM_b21583 at 1122.937 kb on - strand at 1123.046 kb on + strand, within SM_b21584 at 1123.249 kb on - strand, within SM_b21584 at 1123.249 kb on - strand, within SM_b21584 at 1123.283 kb on - strand, within SM_b21584 at 1123.283 kb on - strand, within SM_b21584 at 1123.341 kb on + strand at 1123.341 kb on + strand, within SM_b21584 at 1123.341 kb on + strand, within SM_b21584 at 1123.341 kb on + strand, within SM_b21584 at 1123.344 kb on + strand, within SM_b21584 at 1123.345 kb on - strand, within SM_b21584 at 1123.420 kb on - strand, within SM_b21584 at 1123.420 kb on - strand, within SM_b21584
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 1,120,980 + SM_b21581 0.25 +1.0 1,120,981 - SM_b21581 0.25 +0.4 1,121,047 + SM_b21581 0.32 -0.8 1,121,047 + SM_b21581 0.32 +0.4 1,121,047 + SM_b21581 0.32 +1.0 1,121,082 - SM_b21581 0.35 -1.9 1,121,082 - SM_b21581 0.35 -0.4 1,121,222 + SM_b21581 0.48 +0.8 1,121,223 - SM_b21581 0.48 -1.4 1,121,223 - SM_b21581 0.48 -2.3 1,121,223 - SM_b21581 0.48 +0.5 1,121,223 - SM_b21581 0.48 -0.5 1,121,223 - SM_b21581 0.48 +0.0 1,121,393 + SM_b21581 0.63 -1.7 1,121,393 + SM_b21581 0.63 -1.9 1,121,393 + SM_b21581 0.63 +0.0 1,121,394 - SM_b21581 0.63 +0.5 1,121,394 - SM_b21581 0.63 -1.3 1,121,407 - SM_b21581 0.64 +0.9 1,121,537 + SM_b21581 0.76 -3.1 1,121,711 + +0.9 1,121,802 - -0.0 1,121,816 - -0.7 1,121,962 - SM_b21582 0.11 -0.9 1,121,962 - SM_b21582 0.11 -0.3 1,122,177 + SM_b21582 0.45 +0.1 1,122,177 + SM_b21582 0.45 -2.0 1,122,178 - SM_b21582 0.45 +0.1 1,122,389 + SM_b21582 0.79 -0.7 1,122,402 + SM_b21582 0.81 -0.5 1,122,534 + -1.8 1,122,535 - -2.4 1,122,535 - +0.0 1,122,604 + SM_b21583 0.18 -0.2 1,122,641 - SM_b21583 0.28 +0.7 1,122,684 - SM_b21583 0.40 -1.4 1,122,711 - SM_b21583 0.47 -0.6 1,122,727 - SM_b21583 0.52 +0.1 1,122,767 + SM_b21583 0.63 +0.2 1,122,937 - -0.9 1,123,046 + SM_b21584 0.12 +0.5 1,123,249 - SM_b21584 0.36 -0.6 1,123,249 - SM_b21584 0.36 -1.1 1,123,283 - SM_b21584 0.40 -0.6 1,123,283 - SM_b21584 0.40 +1.0 1,123,341 + +0.8 1,123,341 + SM_b21584 0.47 +0.8 1,123,341 + SM_b21584 0.47 +0.3 1,123,341 + SM_b21584 0.47 -0.4 1,123,344 + SM_b21584 0.47 +0.7 1,123,345 - SM_b21584 0.47 +0.0 1,123,420 - SM_b21584 0.56 +0.7 1,123,420 - SM_b21584 0.56 +0.1
Or see this region's nucleotide sequence