Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21508 and SM_b21509 are separated by 173 nucleotides SM_b21509 and SM_b21510 overlap by 269 nucleotides SM_b21510 and SM_b21511 are separated by 13 nucleotides SM_b21511 and SM_b21512 are separated by 59 nucleotides
SM_b21508: SM_b21508 - dihydrodipicolinate synthetase, at 1,433,836 to 1,434,750
_b21508
SM_b21509: SM_b21509 - plasmid stability protein, at 1,434,924 to 1,435,436
_b21509
SM_b21510: SM_b21510 - plasmid stability protein, at 1,435,168 to 1,435,293
_b21510
SM_b21511: SM_b21511 - plasmid stability protein, at 1,435,307 to 1,435,552
_b21511
SM_b21512: SM_b21512 - hypothetical protein, at 1,435,612 to 1,436,760
_b21512
Position (kb)
1434
1435
1436 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1433.966 kb on + strand, within SM_b21508 at 1434.267 kb on + strand, within SM_b21508 at 1434.268 kb on - strand, within SM_b21508 at 1434.268 kb on - strand, within SM_b21508 at 1434.268 kb on - strand, within SM_b21508 at 1434.333 kb on + strand, within SM_b21508 at 1434.338 kb on + strand, within SM_b21508 at 1434.389 kb on + strand, within SM_b21508 at 1434.390 kb on - strand, within SM_b21508 at 1434.416 kb on + strand, within SM_b21508 at 1434.417 kb on - strand, within SM_b21508 at 1434.422 kb on - strand, within SM_b21508 at 1434.593 kb on + strand, within SM_b21508 at 1434.594 kb on - strand, within SM_b21508 at 1434.792 kb on - strand at 1435.126 kb on + strand, within SM_b21509 at 1435.230 kb on - strand at 1435.265 kb on + strand at 1435.266 kb on - strand at 1435.266 kb on - strand at 1435.266 kb on - strand at 1435.301 kb on + strand, within SM_b21509 at 1435.390 kb on + strand at 1435.391 kb on - strand at 1435.391 kb on - strand at 1435.395 kb on + strand at 1435.396 kb on - strand at 1435.396 kb on - strand at 1435.434 kb on + strand at 1435.526 kb on + strand, within SM_b21511 at 1435.561 kb on + strand at 1435.561 kb on + strand at 1435.562 kb on - strand at 1435.565 kb on + strand at 1435.565 kb on + strand at 1435.566 kb on - strand at 1435.566 kb on - strand at 1435.602 kb on + strand at 1435.602 kb on + strand at 1435.664 kb on + strand at 1435.664 kb on + strand at 1435.664 kb on + strand at 1435.664 kb on + strand at 1435.665 kb on - strand at 1435.665 kb on - strand at 1435.665 kb on - strand at 1435.665 kb on - strand at 1435.725 kb on - strand at 1435.764 kb on + strand, within SM_b21512 at 1435.764 kb on + strand, within SM_b21512 at 1435.765 kb on - strand, within SM_b21512 at 1435.808 kb on + strand at 1436.419 kb on - strand, within SM_b21512 at 1436.419 kb on - strand, within SM_b21512
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 1,433,966 + SM_b21508 0.14 -0.1 1,434,267 + SM_b21508 0.47 +1.2 1,434,268 - SM_b21508 0.47 -0.6 1,434,268 - SM_b21508 0.47 +0.7 1,434,268 - SM_b21508 0.47 +1.6 1,434,333 + SM_b21508 0.54 +0.1 1,434,338 + SM_b21508 0.55 +0.8 1,434,389 + SM_b21508 0.60 +1.8 1,434,390 - SM_b21508 0.61 -0.3 1,434,416 + SM_b21508 0.63 -0.8 1,434,417 - SM_b21508 0.63 +1.1 1,434,422 - SM_b21508 0.64 -0.4 1,434,593 + SM_b21508 0.83 +0.4 1,434,594 - SM_b21508 0.83 +0.4 1,434,792 - -0.1 1,435,126 + SM_b21509 0.39 +1.1 1,435,230 - -2.2 1,435,265 + +0.4 1,435,266 - -0.7 1,435,266 - -1.7 1,435,266 - +1.0 1,435,301 + SM_b21509 0.73 +0.2 1,435,390 + +0.0 1,435,391 - +1.3 1,435,391 - -0.5 1,435,395 + -0.2 1,435,396 - +0.0 1,435,396 - -2.0 1,435,434 + -0.5 1,435,526 + SM_b21511 0.89 -0.7 1,435,561 + -0.1 1,435,561 + -0.1 1,435,562 - +0.6 1,435,565 + -1.0 1,435,565 + +0.4 1,435,566 - -0.6 1,435,566 - +0.2 1,435,602 + +0.6 1,435,602 + +1.8 1,435,664 + -1.6 1,435,664 + -1.3 1,435,664 + -1.1 1,435,664 + +0.4 1,435,665 - +1.0 1,435,665 - -0.5 1,435,665 - +0.6 1,435,665 - +2.1 1,435,725 - -0.0 1,435,764 + SM_b21512 0.13 -1.3 1,435,764 + SM_b21512 0.13 +0.2 1,435,765 - SM_b21512 0.13 +0.5 1,435,808 + +0.8 1,436,419 - SM_b21512 0.70 +2.7 1,436,419 - SM_b21512 0.70 -0.3
Or see this region's nucleotide sequence