Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21307 and SM_b21308 are separated by 44 nucleotides SM_b21308 and SM_b21309 overlap by 4 nucleotides
SM_b21307: SM_b21307 - hypothetical protein, at 969,820 to 970,797
_b21307
SM_b21308: SM_b21308 - glycosyltransferase, forming alpha glycosyl linkages protein, at 970,842 to 972,164
_b21308
SM_b21309: SM_b21309 - hypothetical protein, at 972,161 to 974,377
_b21309
Position (kb) 970
971
972
973 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 969.853 kb on - strand at 970.010 kb on + strand, within SM_b21307 at 970.011 kb on - strand, within SM_b21307 at 970.011 kb on - strand, within SM_b21307 at 970.115 kb on + strand, within SM_b21307 at 970.254 kb on + strand, within SM_b21307 at 970.254 kb on + strand, within SM_b21307 at 970.254 kb on + strand, within SM_b21307 at 970.254 kb on + strand, within SM_b21307 at 970.254 kb on + strand, within SM_b21307 at 970.254 kb on + strand, within SM_b21307 at 970.254 kb on + strand, within SM_b21307 at 970.255 kb on - strand, within SM_b21307 at 970.255 kb on - strand, within SM_b21307 at 970.255 kb on - strand, within SM_b21307 at 970.255 kb on - strand, within SM_b21307 at 970.338 kb on - strand, within SM_b21307 at 970.338 kb on - strand, within SM_b21307 at 970.346 kb on + strand, within SM_b21307 at 970.347 kb on - strand, within SM_b21307 at 970.435 kb on + strand, within SM_b21307 at 970.435 kb on + strand, within SM_b21307 at 970.541 kb on + strand, within SM_b21307 at 970.542 kb on - strand, within SM_b21307 at 970.762 kb on + strand at 970.763 kb on - strand at 970.788 kb on - strand at 970.843 kb on + strand at 970.870 kb on + strand at 970.871 kb on - strand at 971.434 kb on + strand, within SM_b21308 at 971.478 kb on + strand, within SM_b21308 at 971.479 kb on - strand, within SM_b21308 at 971.540 kb on + strand, within SM_b21308 at 971.755 kb on + strand, within SM_b21308 at 971.755 kb on + strand, within SM_b21308 at 971.809 kb on + strand, within SM_b21308 at 972.037 kb on + strand at 972.037 kb on + strand at 972.038 kb on - strand at 972.038 kb on - strand at 972.040 kb on - strand at 972.040 kb on - strand at 972.074 kb on + strand at 972.075 kb on - strand at 972.093 kb on + strand at 972.391 kb on - strand, within SM_b21309 at 972.514 kb on - strand, within SM_b21309 at 972.586 kb on - strand, within SM_b21309 at 972.645 kb on + strand, within SM_b21309 at 972.735 kb on + strand, within SM_b21309 at 972.736 kb on - strand, within SM_b21309 at 972.736 kb on - strand, within SM_b21309
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 969,853 - +1.9 970,010 + SM_b21307 0.19 +1.0 970,011 - SM_b21307 0.20 +0.1 970,011 - SM_b21307 0.20 -0.5 970,115 + SM_b21307 0.30 -0.2 970,254 + SM_b21307 0.44 +2.2 970,254 + SM_b21307 0.44 +1.0 970,254 + SM_b21307 0.44 +1.4 970,254 + SM_b21307 0.44 -0.4 970,254 + SM_b21307 0.44 -3.3 970,254 + SM_b21307 0.44 -0.4 970,254 + SM_b21307 0.44 -0.1 970,255 - SM_b21307 0.44 -0.9 970,255 - SM_b21307 0.44 -0.7 970,255 - SM_b21307 0.44 -1.1 970,255 - SM_b21307 0.44 +0.4 970,338 - SM_b21307 0.53 -0.2 970,338 - SM_b21307 0.53 -0.3 970,346 + SM_b21307 0.54 +0.6 970,347 - SM_b21307 0.54 +0.1 970,435 + SM_b21307 0.63 +1.9 970,435 + SM_b21307 0.63 +0.4 970,541 + SM_b21307 0.74 +0.4 970,542 - SM_b21307 0.74 -1.9 970,762 + -1.7 970,763 - +0.3 970,788 - -0.4 970,843 + -1.1 970,870 + +0.1 970,871 - +1.2 971,434 + SM_b21308 0.45 -0.2 971,478 + SM_b21308 0.48 +0.4 971,479 - SM_b21308 0.48 -0.6 971,540 + SM_b21308 0.53 -2.6 971,755 + SM_b21308 0.69 +0.7 971,755 + SM_b21308 0.69 +0.0 971,809 + SM_b21308 0.73 +1.9 972,037 + -0.9 972,037 + +0.2 972,038 - +0.6 972,038 - +0.5 972,040 - -0.9 972,040 - -0.1 972,074 + -0.1 972,075 - -1.7 972,093 + -1.1 972,391 - SM_b21309 0.10 -0.6 972,514 - SM_b21309 0.16 -0.3 972,586 - SM_b21309 0.19 -1.7 972,645 + SM_b21309 0.22 -0.0 972,735 + SM_b21309 0.26 +0.2 972,736 - SM_b21309 0.26 +0.1 972,736 - SM_b21309 0.26 -0.2
Or see this region's nucleotide sequence