Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21220 and SM_b21221 are separated by 242 nucleotides SM_b21221 and SM_b21222 are separated by 224 nucleotides
SM_b21220: SM_b21220 - ABC transporter for D-Glucosamine, permease component 2 <small>(from data)</small>, at 782,613 to 783,494
_b21220
SM_b21221: SM_b21221 - ABC transporter for D-Glucosamine, periplasmic substrate-binding protein <small>(from data)</small>, at 783,737 to 784,975
_b21221
SM_b21222: SM_b21222 - transcriptional regulator, at 785,200 to 786,429
_b21222
Position (kb) 783
784
785 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 782.831 kb on + strand, within SM_b21220 at 782.831 kb on + strand, within SM_b21220 at 782.832 kb on - strand, within SM_b21220 at 782.832 kb on - strand, within SM_b21220 at 782.869 kb on + strand, within SM_b21220 at 782.870 kb on - strand, within SM_b21220 at 783.058 kb on + strand, within SM_b21220 at 783.059 kb on - strand, within SM_b21220 at 783.118 kb on + strand, within SM_b21220 at 783.118 kb on + strand, within SM_b21220 at 783.118 kb on + strand, within SM_b21220 at 783.118 kb on + strand, within SM_b21220 at 783.119 kb on - strand, within SM_b21220 at 783.119 kb on - strand, within SM_b21220 at 783.119 kb on - strand, within SM_b21220 at 783.331 kb on + strand, within SM_b21220 at 783.332 kb on - strand, within SM_b21220 at 783.332 kb on - strand, within SM_b21220 at 783.529 kb on + strand at 783.530 kb on - strand at 783.843 kb on + strand at 783.867 kb on + strand, within SM_b21221 at 783.867 kb on + strand, within SM_b21221 at 783.867 kb on + strand, within SM_b21221 at 783.940 kb on - strand, within SM_b21221 at 784.003 kb on + strand, within SM_b21221 at 784.003 kb on + strand, within SM_b21221 at 784.014 kb on + strand, within SM_b21221 at 784.015 kb on - strand, within SM_b21221 at 784.173 kb on + strand, within SM_b21221 at 784.173 kb on + strand, within SM_b21221 at 784.173 kb on + strand, within SM_b21221 at 784.173 kb on + strand, within SM_b21221 at 784.174 kb on - strand, within SM_b21221 at 784.174 kb on - strand, within SM_b21221 at 784.174 kb on - strand, within SM_b21221 at 784.174 kb on - strand, within SM_b21221 at 784.174 kb on - strand, within SM_b21221 at 784.179 kb on + strand, within SM_b21221 at 784.180 kb on - strand, within SM_b21221 at 784.180 kb on - strand, within SM_b21221 at 784.180 kb on - strand, within SM_b21221 at 784.180 kb on - strand, within SM_b21221 at 784.180 kb on - strand, within SM_b21221 at 784.229 kb on + strand, within SM_b21221 at 784.229 kb on + strand, within SM_b21221 at 784.229 kb on + strand, within SM_b21221 at 784.230 kb on - strand, within SM_b21221 at 784.268 kb on - strand, within SM_b21221 at 784.281 kb on + strand, within SM_b21221 at 784.282 kb on - strand, within SM_b21221 at 784.282 kb on - strand, within SM_b21221 at 784.296 kb on + strand, within SM_b21221 at 784.296 kb on + strand, within SM_b21221 at 784.297 kb on - strand, within SM_b21221 at 784.297 kb on - strand, within SM_b21221 at 784.297 kb on - strand, within SM_b21221 at 784.297 kb on - strand, within SM_b21221 at 784.297 kb on - strand, within SM_b21221 at 784.297 kb on - strand, within SM_b21221 at 784.548 kb on + strand, within SM_b21221 at 784.593 kb on + strand, within SM_b21221 at 784.686 kb on + strand, within SM_b21221 at 784.725 kb on + strand, within SM_b21221 at 784.777 kb on - strand, within SM_b21221 at 784.859 kb on - strand at 784.860 kb on + strand at 784.989 kb on - strand at 784.989 kb on - strand at 785.172 kb on - strand at 785.594 kb on + strand, within SM_b21222 at 785.594 kb on + strand, within SM_b21222 at 785.594 kb on + strand at 785.594 kb on + strand, within SM_b21222 at 785.875 kb on + strand, within SM_b21222 at 785.875 kb on + strand, within SM_b21222 at 785.884 kb on + strand, within SM_b21222
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 782,831 + SM_b21220 0.25 -2.4 782,831 + SM_b21220 0.25 +4.1 782,832 - SM_b21220 0.25 -1.3 782,832 - SM_b21220 0.25 +3.0 782,869 + SM_b21220 0.29 -0.5 782,870 - SM_b21220 0.29 +0.2 783,058 + SM_b21220 0.50 +0.2 783,059 - SM_b21220 0.51 -1.3 783,118 + SM_b21220 0.57 +0.5 783,118 + SM_b21220 0.57 -0.6 783,118 + SM_b21220 0.57 -1.4 783,118 + SM_b21220 0.57 -0.3 783,119 - SM_b21220 0.57 +0.4 783,119 - SM_b21220 0.57 -0.3 783,119 - SM_b21220 0.57 -0.5 783,331 + SM_b21220 0.81 -1.1 783,332 - SM_b21220 0.82 +0.4 783,332 - SM_b21220 0.82 +0.1 783,529 + +0.2 783,530 - +0.1 783,843 + +0.8 783,867 + SM_b21221 0.10 +1.2 783,867 + SM_b21221 0.10 -0.0 783,867 + SM_b21221 0.10 -1.3 783,940 - SM_b21221 0.16 +1.3 784,003 + SM_b21221 0.21 +0.5 784,003 + SM_b21221 0.21 -0.1 784,014 + SM_b21221 0.22 -2.4 784,015 - SM_b21221 0.22 -0.3 784,173 + SM_b21221 0.35 +0.5 784,173 + SM_b21221 0.35 +0.6 784,173 + SM_b21221 0.35 +0.5 784,173 + SM_b21221 0.35 +1.1 784,174 - SM_b21221 0.35 -0.3 784,174 - SM_b21221 0.35 +0.9 784,174 - SM_b21221 0.35 -0.6 784,174 - SM_b21221 0.35 -0.6 784,174 - SM_b21221 0.35 -1.2 784,179 + SM_b21221 0.36 -1.1 784,180 - SM_b21221 0.36 +0.0 784,180 - SM_b21221 0.36 -0.7 784,180 - SM_b21221 0.36 -0.6 784,180 - SM_b21221 0.36 -0.9 784,180 - SM_b21221 0.36 -1.2 784,229 + SM_b21221 0.40 -0.6 784,229 + SM_b21221 0.40 +0.2 784,229 + SM_b21221 0.40 -0.6 784,230 - SM_b21221 0.40 -0.6 784,268 - SM_b21221 0.43 -0.0 784,281 + SM_b21221 0.44 -1.3 784,282 - SM_b21221 0.44 -1.1 784,282 - SM_b21221 0.44 -1.2 784,296 + SM_b21221 0.45 -0.9 784,296 + SM_b21221 0.45 -1.7 784,297 - SM_b21221 0.45 +0.2 784,297 - SM_b21221 0.45 -0.2 784,297 - SM_b21221 0.45 -1.0 784,297 - SM_b21221 0.45 -0.3 784,297 - SM_b21221 0.45 -0.0 784,297 - SM_b21221 0.45 -1.8 784,548 + SM_b21221 0.65 -0.6 784,593 + SM_b21221 0.69 -1.2 784,686 + SM_b21221 0.77 +1.0 784,725 + SM_b21221 0.80 +0.0 784,777 - SM_b21221 0.84 -0.2 784,859 - -0.1 784,860 + +0.3 784,989 - -0.8 784,989 - +1.1 785,172 - +0.6 785,594 + SM_b21222 0.32 +0.4 785,594 + SM_b21222 0.32 -0.1 785,594 + -0.5 785,594 + SM_b21222 0.32 +0.9 785,875 + SM_b21222 0.55 +0.6 785,875 + SM_b21222 0.55 -3.9 785,884 + SM_b21222 0.56 +1.2
Or see this region's nucleotide sequence