Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21213 and SM_b21214 are separated by 128 nucleotides SM_b21214 and SM_b21215 are separated by 67 nucleotides SM_b21215 and SM_b21307 are separated by 117 nucleotides
SM_b21213: SM_b21213 - serinethreonine protein phosphatase, at 966,517 to 967,176
_b21213
SM_b21214: SM_b21214 - 2-deoxyglucose-6-phosphate phosphatase, at 967,305 to 968,027
_b21214
SM_b21215: SM_b21215 - dipeptide uptake ABC transporter substrate-binding protein precursor, at 968,095 to 969,702
_b21215
SM_b21307: SM_b21307 - hypothetical protein, at 969,820 to 970,797
_b21307
Position (kb) 968
969
970 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 967.169 kb on - strand at 967.169 kb on - strand at 967.174 kb on + strand at 967.175 kb on - strand at 967.175 kb on - strand at 967.194 kb on + strand at 967.194 kb on + strand at 967.195 kb on - strand at 967.195 kb on - strand at 967.275 kb on - strand at 967.303 kb on - strand at 967.303 kb on - strand at 967.303 kb on - strand at 967.423 kb on + strand, within SM_b21214 at 967.424 kb on - strand, within SM_b21214 at 967.483 kb on + strand, within SM_b21214 at 967.484 kb on - strand, within SM_b21214 at 967.484 kb on - strand, within SM_b21214 at 967.484 kb on - strand, within SM_b21214 at 967.731 kb on - strand, within SM_b21214 at 967.731 kb on - strand, within SM_b21214 at 967.797 kb on + strand, within SM_b21214 at 967.946 kb on + strand, within SM_b21214 at 967.946 kb on + strand, within SM_b21214 at 968.048 kb on + strand at 968.048 kb on + strand at 968.049 kb on - strand at 968.193 kb on + strand at 968.194 kb on - strand at 968.194 kb on - strand at 968.195 kb on + strand at 968.195 kb on + strand at 968.195 kb on + strand at 968.195 kb on + strand at 968.196 kb on - strand at 968.196 kb on - strand at 968.196 kb on - strand at 968.196 kb on - strand at 968.196 kb on - strand at 968.196 kb on - strand at 968.196 kb on - strand at 968.367 kb on - strand, within SM_b21215 at 968.378 kb on + strand, within SM_b21215 at 968.411 kb on + strand, within SM_b21215 at 968.411 kb on + strand, within SM_b21215 at 968.454 kb on - strand, within SM_b21215 at 968.683 kb on - strand, within SM_b21215 at 968.813 kb on + strand, within SM_b21215 at 968.813 kb on + strand, within SM_b21215 at 968.813 kb on + strand, within SM_b21215 at 968.813 kb on + strand, within SM_b21215 at 968.814 kb on - strand, within SM_b21215 at 968.814 kb on - strand, within SM_b21215 at 968.814 kb on - strand, within SM_b21215 at 968.814 kb on - strand, within SM_b21215 at 968.814 kb on - strand, within SM_b21215 at 969.002 kb on + strand, within SM_b21215 at 969.059 kb on + strand, within SM_b21215 at 969.117 kb on + strand, within SM_b21215 at 969.117 kb on + strand, within SM_b21215 at 969.118 kb on - strand, within SM_b21215 at 969.118 kb on - strand, within SM_b21215 at 969.118 kb on - strand, within SM_b21215 at 969.118 kb on - strand, within SM_b21215 at 969.126 kb on - strand, within SM_b21215 at 969.369 kb on - strand, within SM_b21215 at 969.386 kb on + strand, within SM_b21215 at 969.387 kb on - strand, within SM_b21215 at 969.410 kb on - strand, within SM_b21215 at 969.410 kb on - strand, within SM_b21215 at 969.447 kb on + strand, within SM_b21215 at 969.448 kb on - strand, within SM_b21215 at 969.448 kb on - strand, within SM_b21215 at 969.448 kb on - strand, within SM_b21215 at 969.450 kb on - strand, within SM_b21215 at 969.524 kb on - strand, within SM_b21215 at 969.592 kb on + strand at 969.817 kb on - strand at 969.853 kb on - strand at 970.010 kb on + strand, within SM_b21307 at 970.011 kb on - strand, within SM_b21307 at 970.011 kb on - strand, within SM_b21307 at 970.115 kb on + strand, within SM_b21307 at 970.254 kb on + strand, within SM_b21307 at 970.254 kb on + strand, within SM_b21307 at 970.254 kb on + strand, within SM_b21307 at 970.254 kb on + strand, within SM_b21307 at 970.254 kb on + strand, within SM_b21307 at 970.254 kb on + strand, within SM_b21307 at 970.254 kb on + strand, within SM_b21307 at 970.255 kb on - strand, within SM_b21307 at 970.255 kb on - strand, within SM_b21307 at 970.255 kb on - strand, within SM_b21307 at 970.255 kb on - strand, within SM_b21307 at 970.338 kb on - strand, within SM_b21307 at 970.338 kb on - strand, within SM_b21307 at 970.346 kb on + strand, within SM_b21307 at 970.347 kb on - strand, within SM_b21307 at 970.435 kb on + strand, within SM_b21307 at 970.435 kb on + strand, within SM_b21307 at 970.541 kb on + strand, within SM_b21307 at 970.542 kb on - strand, within SM_b21307
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 967,169 - +0.2 967,169 - +0.1 967,174 + -1.5 967,175 - -1.2 967,175 - +1.3 967,194 + +0.0 967,194 + -0.5 967,195 - -1.9 967,195 - +0.4 967,275 - -0.1 967,303 - -0.3 967,303 - +1.6 967,303 - +0.1 967,423 + SM_b21214 0.16 -0.6 967,424 - SM_b21214 0.16 -0.1 967,483 + SM_b21214 0.25 -0.1 967,484 - SM_b21214 0.25 -0.0 967,484 - SM_b21214 0.25 +1.1 967,484 - SM_b21214 0.25 +0.4 967,731 - SM_b21214 0.59 +1.5 967,731 - SM_b21214 0.59 -0.6 967,797 + SM_b21214 0.68 +0.3 967,946 + SM_b21214 0.89 -0.9 967,946 + SM_b21214 0.89 +0.6 968,048 + -0.7 968,048 + -1.2 968,049 - -0.1 968,193 + -0.2 968,194 - -1.4 968,194 - +0.1 968,195 + +0.7 968,195 + +0.3 968,195 + +0.7 968,195 + +2.5 968,196 - +1.1 968,196 - -0.6 968,196 - -1.9 968,196 - +0.9 968,196 - -1.9 968,196 - -2.4 968,196 - -1.6 968,367 - SM_b21215 0.17 +1.0 968,378 + SM_b21215 0.18 -0.7 968,411 + SM_b21215 0.20 +0.9 968,411 + SM_b21215 0.20 -1.3 968,454 - SM_b21215 0.22 +0.5 968,683 - SM_b21215 0.37 +0.4 968,813 + SM_b21215 0.45 +0.6 968,813 + SM_b21215 0.45 -0.3 968,813 + SM_b21215 0.45 -3.3 968,813 + SM_b21215 0.45 -0.1 968,814 - SM_b21215 0.45 +0.5 968,814 - SM_b21215 0.45 +0.2 968,814 - SM_b21215 0.45 -0.5 968,814 - SM_b21215 0.45 -0.5 968,814 - SM_b21215 0.45 +0.2 969,002 + SM_b21215 0.56 +0.9 969,059 + SM_b21215 0.60 -0.0 969,117 + SM_b21215 0.64 +1.0 969,117 + SM_b21215 0.64 +0.3 969,118 - SM_b21215 0.64 +1.3 969,118 - SM_b21215 0.64 +0.4 969,118 - SM_b21215 0.64 +0.3 969,118 - SM_b21215 0.64 +2.2 969,126 - SM_b21215 0.64 -0.1 969,369 - SM_b21215 0.79 +0.2 969,386 + SM_b21215 0.80 +0.0 969,387 - SM_b21215 0.80 -0.3 969,410 - SM_b21215 0.82 -1.1 969,410 - SM_b21215 0.82 -2.3 969,447 + SM_b21215 0.84 +1.6 969,448 - SM_b21215 0.84 +1.3 969,448 - SM_b21215 0.84 +0.4 969,448 - SM_b21215 0.84 +0.7 969,450 - SM_b21215 0.84 +0.4 969,524 - SM_b21215 0.89 -0.6 969,592 + -0.1 969,817 - -1.4 969,853 - +1.9 970,010 + SM_b21307 0.19 +1.0 970,011 - SM_b21307 0.20 +0.1 970,011 - SM_b21307 0.20 -0.5 970,115 + SM_b21307 0.30 -0.2 970,254 + SM_b21307 0.44 +2.2 970,254 + SM_b21307 0.44 +1.0 970,254 + SM_b21307 0.44 +1.4 970,254 + SM_b21307 0.44 -0.4 970,254 + SM_b21307 0.44 -3.3 970,254 + SM_b21307 0.44 -0.4 970,254 + SM_b21307 0.44 -0.1 970,255 - SM_b21307 0.44 -0.9 970,255 - SM_b21307 0.44 -0.7 970,255 - SM_b21307 0.44 -1.1 970,255 - SM_b21307 0.44 +0.4 970,338 - SM_b21307 0.53 -0.2 970,338 - SM_b21307 0.53 -0.3 970,346 + SM_b21307 0.54 +0.6 970,347 - SM_b21307 0.54 +0.1 970,435 + SM_b21307 0.63 +1.9 970,435 + SM_b21307 0.63 +0.4 970,541 + SM_b21307 0.74 +0.4 970,542 - SM_b21307 0.74 -1.9
Or see this region's nucleotide sequence