Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21198 and SM_b21199 are separated by 1 nucleotides SM_b21199 and SM_b21200 are separated by 202 nucleotides
SM_b21198: SM_b21198 - oligopeptide uptake ABC transporter permease, at 947,584 to 948,714
_b21198
SM_b21199: SM_b21199 - oligopeptide ABC transporter ATP-binding protein, at 948,716 to 950,317
_b21199
SM_b21200: SM_b21200 - two-component response regulator protein, at 950,520 to 951,863
_b21200
Position (kb) 948
949
950
951 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 947.755 kb on + strand, within SM_b21198 at 947.756 kb on - strand, within SM_b21198 at 947.756 kb on - strand, within SM_b21198 at 947.776 kb on + strand, within SM_b21198 at 947.776 kb on + strand, within SM_b21198 at 947.777 kb on - strand, within SM_b21198 at 947.815 kb on - strand, within SM_b21198 at 948.047 kb on - strand, within SM_b21198 at 948.168 kb on - strand, within SM_b21198 at 948.168 kb on - strand, within SM_b21198 at 948.168 kb on - strand, within SM_b21198 at 948.190 kb on - strand, within SM_b21198 at 948.207 kb on + strand, within SM_b21198 at 948.239 kb on - strand, within SM_b21198 at 948.375 kb on + strand at 948.457 kb on - strand, within SM_b21198 at 948.457 kb on - strand, within SM_b21198 at 948.457 kb on - strand, within SM_b21198 at 948.558 kb on + strand, within SM_b21198 at 948.599 kb on + strand, within SM_b21198 at 948.599 kb on + strand, within SM_b21198 at 948.600 kb on - strand, within SM_b21198 at 948.600 kb on - strand, within SM_b21198 at 948.600 kb on - strand, within SM_b21198 at 948.600 kb on - strand, within SM_b21198 at 948.747 kb on + strand at 948.747 kb on + strand at 949.043 kb on + strand, within SM_b21199 at 949.043 kb on + strand, within SM_b21199 at 949.044 kb on - strand, within SM_b21199 at 949.383 kb on - strand, within SM_b21199 at 949.383 kb on - strand, within SM_b21199 at 949.383 kb on - strand, within SM_b21199 at 949.447 kb on + strand, within SM_b21199 at 949.447 kb on + strand, within SM_b21199 at 949.447 kb on + strand, within SM_b21199 at 949.472 kb on + strand, within SM_b21199 at 949.473 kb on - strand, within SM_b21199 at 949.473 kb on - strand, within SM_b21199 at 949.474 kb on + strand, within SM_b21199 at 949.475 kb on - strand, within SM_b21199 at 949.475 kb on - strand, within SM_b21199 at 949.571 kb on + strand, within SM_b21199 at 949.571 kb on + strand, within SM_b21199 at 949.573 kb on + strand, within SM_b21199 at 949.573 kb on + strand, within SM_b21199 at 949.574 kb on - strand, within SM_b21199 at 949.574 kb on - strand, within SM_b21199 at 949.639 kb on + strand, within SM_b21199 at 949.743 kb on - strand, within SM_b21199 at 950.153 kb on + strand, within SM_b21199 at 950.153 kb on + strand, within SM_b21199 at 950.153 kb on + strand, within SM_b21199 at 950.154 kb on - strand, within SM_b21199 at 950.201 kb on + strand at 950.201 kb on + strand at 950.279 kb on + strand at 950.281 kb on + strand at 950.465 kb on - strand at 950.575 kb on + strand at 950.851 kb on + strand, within SM_b21200 at 950.954 kb on - strand, within SM_b21200 at 950.985 kb on + strand, within SM_b21200 at 950.985 kb on + strand, within SM_b21200 at 950.985 kb on + strand, within SM_b21200 at 951.040 kb on - strand, within SM_b21200
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 947,755 + SM_b21198 0.15 -0.8 947,756 - SM_b21198 0.15 +0.5 947,756 - SM_b21198 0.15 +0.2 947,776 + SM_b21198 0.17 -1.8 947,776 + SM_b21198 0.17 +0.0 947,777 - SM_b21198 0.17 +1.2 947,815 - SM_b21198 0.20 -3.6 948,047 - SM_b21198 0.41 -0.0 948,168 - SM_b21198 0.52 -0.8 948,168 - SM_b21198 0.52 +0.3 948,168 - SM_b21198 0.52 -0.5 948,190 - SM_b21198 0.54 -0.2 948,207 + SM_b21198 0.55 +1.3 948,239 - SM_b21198 0.58 +0.6 948,375 + -0.3 948,457 - SM_b21198 0.77 -0.9 948,457 - SM_b21198 0.77 +0.2 948,457 - SM_b21198 0.77 +0.0 948,558 + SM_b21198 0.86 -0.7 948,599 + SM_b21198 0.90 -0.5 948,599 + SM_b21198 0.90 +0.1 948,600 - SM_b21198 0.90 -0.9 948,600 - SM_b21198 0.90 +0.3 948,600 - SM_b21198 0.90 +0.9 948,600 - SM_b21198 0.90 -0.9 948,747 + -0.1 948,747 + +0.4 949,043 + SM_b21199 0.20 +1.4 949,043 + SM_b21199 0.20 -1.1 949,044 - SM_b21199 0.20 -1.2 949,383 - SM_b21199 0.42 -0.3 949,383 - SM_b21199 0.42 -1.7 949,383 - SM_b21199 0.42 -0.4 949,447 + SM_b21199 0.46 +0.0 949,447 + SM_b21199 0.46 +0.2 949,447 + SM_b21199 0.46 -0.5 949,472 + SM_b21199 0.47 -1.2 949,473 - SM_b21199 0.47 +0.3 949,473 - SM_b21199 0.47 -1.3 949,474 + SM_b21199 0.47 -0.9 949,475 - SM_b21199 0.47 -0.8 949,475 - SM_b21199 0.47 +0.6 949,571 + SM_b21199 0.53 +1.7 949,571 + SM_b21199 0.53 -0.7 949,573 + SM_b21199 0.53 -0.5 949,573 + SM_b21199 0.53 -0.6 949,574 - SM_b21199 0.54 -1.2 949,574 - SM_b21199 0.54 -1.5 949,639 + SM_b21199 0.58 -0.2 949,743 - SM_b21199 0.64 -0.2 950,153 + SM_b21199 0.90 +0.1 950,153 + SM_b21199 0.90 -1.1 950,153 + SM_b21199 0.90 +0.2 950,154 - SM_b21199 0.90 +0.8 950,201 + +0.1 950,201 + +0.8 950,279 + +0.8 950,281 + +0.1 950,465 - -0.9 950,575 + -0.8 950,851 + SM_b21200 0.25 +1.1 950,954 - SM_b21200 0.32 +0.1 950,985 + SM_b21200 0.35 +0.2 950,985 + SM_b21200 0.35 +0.5 950,985 + SM_b21200 0.35 +0.4 951,040 - SM_b21200 0.39 -3.0
Or see this region's nucleotide sequence