Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21149 and SM_b21150 overlap by 4 nucleotides SM_b21150 and SM_b21151 are separated by 29 nucleotides SM_b21151 and SM_b21152 are separated by 88 nucleotides
SM_b21149: SM_b21149 - sugar uptake ABC transporter permease, at 893,787 to 894,671
_b21149
SM_b21150: SM_b21150 - sugar uptake ABC transporter permease, at 894,668 to 895,525
_b21150
SM_b21151: SM_b21151 - substrate-binding protein of a sugar uptake ABC transporter system, at 895,555 to 896,784
_b21151
SM_b21152: SM_b21152 - sugar uptake ABC transporter ATP-binding protein, at 896,873 to 898,006
_b21152
Position (kb) 895
896
897 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 894.599 kb on + strand at 894.627 kb on + strand at 894.627 kb on + strand at 894.704 kb on + strand at 894.722 kb on + strand at 894.722 kb on + strand at 894.722 kb on + strand at 894.722 kb on + strand at 894.722 kb on + strand at 894.783 kb on + strand, within SM_b21150 at 894.783 kb on + strand, within SM_b21150 at 894.783 kb on + strand, within SM_b21150 at 894.858 kb on - strand, within SM_b21150 at 894.858 kb on - strand, within SM_b21150 at 894.898 kb on + strand, within SM_b21150 at 894.899 kb on - strand, within SM_b21150 at 894.968 kb on + strand, within SM_b21150 at 894.968 kb on + strand, within SM_b21150 at 894.969 kb on - strand, within SM_b21150 at 895.104 kb on - strand, within SM_b21150 at 895.169 kb on + strand, within SM_b21150 at 895.169 kb on + strand, within SM_b21150 at 895.170 kb on - strand, within SM_b21150 at 895.232 kb on + strand, within SM_b21150 at 895.239 kb on + strand, within SM_b21150 at 895.240 kb on - strand, within SM_b21150 at 895.281 kb on + strand, within SM_b21150 at 895.281 kb on + strand, within SM_b21150 at 895.310 kb on + strand at 895.311 kb on - strand, within SM_b21150 at 895.358 kb on + strand, within SM_b21150 at 895.358 kb on + strand, within SM_b21150 at 895.359 kb on - strand, within SM_b21150 at 895.389 kb on - strand, within SM_b21150 at 895.485 kb on - strand at 895.524 kb on - strand at 895.534 kb on + strand at 895.560 kb on + strand at 895.561 kb on - strand at 895.561 kb on - strand at 895.561 kb on - strand at 895.576 kb on - strand at 895.660 kb on + strand at 895.684 kb on - strand, within SM_b21151 at 895.696 kb on + strand, within SM_b21151 at 895.696 kb on + strand, within SM_b21151 at 895.696 kb on + strand, within SM_b21151 at 895.696 kb on + strand, within SM_b21151 at 895.820 kb on - strand, within SM_b21151 at 895.906 kb on + strand, within SM_b21151 at 895.907 kb on - strand, within SM_b21151 at 895.914 kb on + strand, within SM_b21151 at 895.914 kb on + strand, within SM_b21151 at 895.960 kb on - strand, within SM_b21151 at 895.985 kb on - strand, within SM_b21151 at 896.158 kb on + strand, within SM_b21151 at 896.160 kb on + strand, within SM_b21151 at 896.161 kb on - strand, within SM_b21151 at 896.161 kb on - strand, within SM_b21151 at 896.194 kb on - strand, within SM_b21151 at 896.194 kb on - strand, within SM_b21151 at 896.194 kb on - strand, within SM_b21151 at 896.194 kb on - strand, within SM_b21151 at 896.236 kb on + strand, within SM_b21151 at 896.236 kb on + strand, within SM_b21151 at 896.236 kb on + strand, within SM_b21151 at 896.278 kb on + strand, within SM_b21151 at 896.278 kb on + strand, within SM_b21151 at 896.388 kb on - strand, within SM_b21151 at 896.625 kb on + strand, within SM_b21151 at 896.636 kb on + strand, within SM_b21151 at 896.636 kb on + strand, within SM_b21151 at 896.641 kb on + strand, within SM_b21151 at 896.642 kb on - strand, within SM_b21151 at 896.642 kb on - strand, within SM_b21151 at 896.776 kb on + strand at 896.777 kb on - strand at 896.783 kb on - strand at 896.783 kb on - strand at 896.783 kb on - strand at 896.783 kb on - strand at 896.783 kb on - strand at 896.783 kb on - strand at 896.830 kb on + strand at 896.830 kb on + strand at 896.830 kb on + strand at 896.830 kb on + strand at 896.872 kb on - strand at 896.918 kb on + strand at 896.918 kb on + strand at 896.918 kb on + strand at 896.919 kb on - strand at 896.919 kb on - strand at 896.919 kb on - strand at 896.919 kb on - strand at 897.122 kb on + strand, within SM_b21152 at 897.122 kb on + strand, within SM_b21152 at 897.122 kb on + strand, within SM_b21152 at 897.123 kb on - strand, within SM_b21152 at 897.123 kb on - strand, within SM_b21152 at 897.123 kb on - strand, within SM_b21152 at 897.131 kb on + strand, within SM_b21152 at 897.139 kb on + strand, within SM_b21152 at 897.232 kb on - strand, within SM_b21152 at 897.232 kb on - strand, within SM_b21152 at 897.437 kb on + strand, within SM_b21152 at 897.437 kb on + strand, within SM_b21152 at 897.537 kb on - strand, within SM_b21152 at 897.537 kb on - strand, within SM_b21152 at 897.553 kb on + strand, within SM_b21152 at 897.554 kb on - strand, within SM_b21152 at 897.555 kb on + strand, within SM_b21152 at 897.555 kb on + strand, within SM_b21152 at 897.555 kb on + strand, within SM_b21152 at 897.556 kb on - strand, within SM_b21152 at 897.644 kb on + strand, within SM_b21152 at 897.644 kb on + strand, within SM_b21152 at 897.644 kb on + strand, within SM_b21152 at 897.706 kb on - strand, within SM_b21152 at 897.777 kb on + strand, within SM_b21152
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 894,599 + -1.9 894,627 + +0.7 894,627 + -1.2 894,704 + +0.3 894,722 + -0.2 894,722 + -1.3 894,722 + +0.1 894,722 + -0.1 894,722 + -0.5 894,783 + SM_b21150 0.13 +1.6 894,783 + SM_b21150 0.13 +1.0 894,783 + SM_b21150 0.13 +1.1 894,858 - SM_b21150 0.22 -2.6 894,858 - SM_b21150 0.22 -0.3 894,898 + SM_b21150 0.27 +0.9 894,899 - SM_b21150 0.27 -0.8 894,968 + SM_b21150 0.35 +0.5 894,968 + SM_b21150 0.35 -0.6 894,969 - SM_b21150 0.35 +1.8 895,104 - SM_b21150 0.51 +0.8 895,169 + SM_b21150 0.58 +1.8 895,169 + SM_b21150 0.58 -1.0 895,170 - SM_b21150 0.59 +0.4 895,232 + SM_b21150 0.66 +0.7 895,239 + SM_b21150 0.67 +0.8 895,240 - SM_b21150 0.67 +0.4 895,281 + SM_b21150 0.71 -0.7 895,281 + SM_b21150 0.71 -1.9 895,310 + +2.6 895,311 - SM_b21150 0.75 +1.3 895,358 + SM_b21150 0.80 -1.0 895,358 + SM_b21150 0.80 -0.3 895,359 - SM_b21150 0.81 +0.0 895,389 - SM_b21150 0.84 -1.1 895,485 - +1.0 895,524 - +0.0 895,534 + +1.5 895,560 + +0.3 895,561 - -0.2 895,561 - +0.9 895,561 - +0.4 895,576 - -1.7 895,660 + -0.5 895,684 - SM_b21151 0.10 -0.6 895,696 + SM_b21151 0.11 +0.5 895,696 + SM_b21151 0.11 -0.4 895,696 + SM_b21151 0.11 +0.2 895,696 + SM_b21151 0.11 +0.8 895,820 - SM_b21151 0.22 +2.2 895,906 + SM_b21151 0.29 +0.5 895,907 - SM_b21151 0.29 -1.9 895,914 + SM_b21151 0.29 +0.0 895,914 + SM_b21151 0.29 -1.5 895,960 - SM_b21151 0.33 +0.2 895,985 - SM_b21151 0.35 +1.1 896,158 + SM_b21151 0.49 +0.3 896,160 + SM_b21151 0.49 +0.1 896,161 - SM_b21151 0.49 -0.7 896,161 - SM_b21151 0.49 +0.6 896,194 - SM_b21151 0.52 -0.6 896,194 - SM_b21151 0.52 -0.7 896,194 - SM_b21151 0.52 -0.9 896,194 - SM_b21151 0.52 -0.5 896,236 + SM_b21151 0.55 +0.5 896,236 + SM_b21151 0.55 -0.7 896,236 + SM_b21151 0.55 -0.5 896,278 + SM_b21151 0.59 +1.8 896,278 + SM_b21151 0.59 -1.5 896,388 - SM_b21151 0.68 +0.6 896,625 + SM_b21151 0.87 -0.4 896,636 + SM_b21151 0.88 +0.3 896,636 + SM_b21151 0.88 +0.1 896,641 + SM_b21151 0.88 -0.1 896,642 - SM_b21151 0.88 -0.2 896,642 - SM_b21151 0.88 +0.3 896,776 + +0.9 896,777 - -1.6 896,783 - -1.2 896,783 - -1.8 896,783 - +0.6 896,783 - -1.5 896,783 - -2.5 896,783 - -1.2 896,830 + -0.6 896,830 + +0.6 896,830 + -0.5 896,830 + -0.5 896,872 - -2.9 896,918 + -0.7 896,918 + -2.4 896,918 + +1.1 896,919 - -1.1 896,919 - -0.2 896,919 - -0.2 896,919 - -2.7 897,122 + SM_b21152 0.22 -0.0 897,122 + SM_b21152 0.22 +0.4 897,122 + SM_b21152 0.22 +2.1 897,123 - SM_b21152 0.22 -2.3 897,123 - SM_b21152 0.22 -0.9 897,123 - SM_b21152 0.22 -0.3 897,131 + SM_b21152 0.23 -0.5 897,139 + SM_b21152 0.23 -1.9 897,232 - SM_b21152 0.32 +1.3 897,232 - SM_b21152 0.32 -0.6 897,437 + SM_b21152 0.50 -1.5 897,437 + SM_b21152 0.50 +1.4 897,537 - SM_b21152 0.59 -0.3 897,537 - SM_b21152 0.59 +0.2 897,553 + SM_b21152 0.60 -0.7 897,554 - SM_b21152 0.60 -0.0 897,555 + SM_b21152 0.60 +0.2 897,555 + SM_b21152 0.60 +0.6 897,555 + SM_b21152 0.60 +0.1 897,556 - SM_b21152 0.60 -0.9 897,644 + SM_b21152 0.68 -0.8 897,644 + SM_b21152 0.68 -3.0 897,644 + SM_b21152 0.68 -0.8 897,706 - SM_b21152 0.73 -0.5 897,777 + SM_b21152 0.80 -1.2
Or see this region's nucleotide sequence