Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21109 and SM_b21110 are separated by 1 nucleotides SM_b21110 and SM_b21111 overlap by 4 nucleotides SM_b21111 and SM_b21112 are separated by 22 nucleotides SM_b21112 and SM_b21113 are separated by 123 nucleotides
SM_b21109: SM_b21109 - L-fucose dehydrogenase (EC 1.1.1.122) <small>(from data)</small>, at 750,677 to 751,759
_b21109
SM_b21110: SM_b21110 - dehydratase involved in L-fucose catabolism <small>(from data)</small>, at 751,761 to 752,222
_b21110
SM_b21111: SM_b21111 - oxidoreductase, RED superfamily protein, at 752,219 to 752,953
_b21111
SM_b21112: SM_b21112 - L-2,4-diketo-3-deoxyrhamnonate hydrolase; 2,4-dioxopentanoate hydrolase <small>(from data)</small>, at 752,976 to 753,821
_b21112
SM_b21113: SM_b21113 - hypothetical protein, at 753,945 to 755,222
_b21113
Position (kb) 752
753 Strain fitness (log2 ratio) -2
-1
0
1
2 at 751.256 kb on + strand, within SM_b21109 at 751.256 kb on + strand, within SM_b21109 at 751.256 kb on + strand, within SM_b21109 at 751.257 kb on - strand, within SM_b21109 at 751.472 kb on + strand, within SM_b21109 at 751.473 kb on - strand, within SM_b21109 at 751.473 kb on - strand, within SM_b21109 at 751.473 kb on - strand, within SM_b21109 at 751.779 kb on + strand at 751.783 kb on - strand at 751.783 kb on - strand at 751.783 kb on - strand at 751.783 kb on - strand at 751.791 kb on + strand at 751.791 kb on + strand at 752.008 kb on - strand, within SM_b21110 at 752.008 kb on - strand, within SM_b21110 at 752.054 kb on + strand, within SM_b21110 at 752.055 kb on - strand, within SM_b21110 at 752.213 kb on + strand at 752.213 kb on + strand at 752.214 kb on - strand at 752.254 kb on - strand at 752.274 kb on + strand at 752.274 kb on + strand at 752.275 kb on - strand at 752.275 kb on - strand at 752.714 kb on + strand, within SM_b21111 at 752.714 kb on + strand, within SM_b21111 at 752.715 kb on - strand at 752.718 kb on + strand, within SM_b21111 at 752.718 kb on + strand, within SM_b21111 at 752.805 kb on - strand, within SM_b21111 at 752.805 kb on - strand, within SM_b21111 at 752.889 kb on - strand at 752.889 kb on - strand at 752.907 kb on - strand at 752.907 kb on - strand at 752.925 kb on - strand at 752.992 kb on - strand at 753.064 kb on + strand, within SM_b21112 at 753.213 kb on + strand, within SM_b21112 at 753.213 kb on + strand, within SM_b21112 at 753.384 kb on + strand, within SM_b21112 at 753.385 kb on - strand, within SM_b21112 at 753.423 kb on + strand, within SM_b21112 at 753.423 kb on + strand, within SM_b21112 at 753.628 kb on - strand, within SM_b21112 at 753.651 kb on + strand, within SM_b21112 at 753.651 kb on + strand, within SM_b21112 at 753.687 kb on - strand, within SM_b21112 at 753.776 kb on - strand at 753.824 kb on + strand at 753.824 kb on + strand at 753.825 kb on - strand at 753.932 kb on + strand at 753.932 kb on + strand at 753.933 kb on - strand at 753.933 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 751,256 + SM_b21109 0.53 +0.7 751,256 + SM_b21109 0.53 +0.0 751,256 + SM_b21109 0.53 -2.1 751,257 - SM_b21109 0.54 +0.4 751,472 + SM_b21109 0.73 -0.3 751,473 - SM_b21109 0.73 +0.1 751,473 - SM_b21109 0.73 -2.5 751,473 - SM_b21109 0.73 -0.7 751,779 + -1.6 751,783 - +1.0 751,783 - -0.6 751,783 - -0.0 751,783 - +1.0 751,791 + -1.5 751,791 + -0.7 752,008 - SM_b21110 0.53 -0.9 752,008 - SM_b21110 0.53 -0.4 752,054 + SM_b21110 0.63 +1.3 752,055 - SM_b21110 0.64 +0.3 752,213 + +0.3 752,213 + -0.8 752,214 - -0.8 752,254 - -0.1 752,274 + +1.3 752,274 + +1.0 752,275 - +0.6 752,275 - +0.1 752,714 + SM_b21111 0.67 -1.7 752,714 + SM_b21111 0.67 +0.5 752,715 - +2.3 752,718 + SM_b21111 0.68 +1.9 752,718 + SM_b21111 0.68 +0.2 752,805 - SM_b21111 0.80 -0.5 752,805 - SM_b21111 0.80 +2.0 752,889 - +1.7 752,889 - +0.8 752,907 - -0.4 752,907 - +0.3 752,925 - +1.3 752,992 - +0.4 753,064 + SM_b21112 0.10 -1.0 753,213 + SM_b21112 0.28 +0.4 753,213 + SM_b21112 0.28 -2.3 753,384 + SM_b21112 0.48 +0.2 753,385 - SM_b21112 0.48 +0.4 753,423 + SM_b21112 0.53 +1.2 753,423 + SM_b21112 0.53 -0.1 753,628 - SM_b21112 0.77 -1.2 753,651 + SM_b21112 0.80 +1.8 753,651 + SM_b21112 0.80 +0.5 753,687 - SM_b21112 0.84 +0.8 753,776 - +0.4 753,824 + -0.6 753,824 + -1.3 753,825 - -1.6 753,932 + -2.2 753,932 + +0.7 753,933 - +0.7 753,933 - +0.5
Or see this region's nucleotide sequence