Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21076 and SM_b21077 are separated by 149 nucleotides SM_b21077 and SM_b21078 overlap by 2 nucleotides SM_b21078 and SM_b21079 are separated by 428 nucleotides
SM_b21076: SM_b21076 - glycosyltransferase, at 713,304 to 714,437
_b21076
SM_b21077: SM_b21077 - hypothetical protein, at 714,587 to 714,877
_b21077
SM_b21078: SM_b21078 - glycosyltransferase, at 714,876 to 716,084
_b21078
SM_b21079: SM_b21079 - transcriptional regulator, at 716,513 to 717,244
_b21079
Position (kb) 714
715
716
717 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 714.042 kb on + strand, within SM_b21076 at 714.043 kb on - strand, within SM_b21076 at 714.043 kb on - strand, within SM_b21076 at 714.043 kb on - strand, within SM_b21076 at 714.045 kb on + strand, within SM_b21076 at 714.045 kb on + strand, within SM_b21076 at 714.045 kb on + strand, within SM_b21076 at 714.045 kb on + strand, within SM_b21076 at 714.045 kb on + strand, within SM_b21076 at 714.045 kb on + strand, within SM_b21076 at 714.045 kb on + strand, within SM_b21076 at 714.045 kb on + strand, within SM_b21076 at 714.046 kb on - strand, within SM_b21076 at 714.046 kb on - strand, within SM_b21076 at 714.046 kb on - strand, within SM_b21076 at 714.046 kb on - strand, within SM_b21076 at 714.046 kb on - strand, within SM_b21076 at 714.046 kb on - strand, within SM_b21076 at 714.079 kb on + strand, within SM_b21076 at 714.079 kb on + strand, within SM_b21076 at 714.079 kb on + strand, within SM_b21076 at 714.092 kb on - strand, within SM_b21076 at 714.092 kb on - strand, within SM_b21076 at 714.153 kb on - strand, within SM_b21076 at 714.225 kb on - strand, within SM_b21076 at 714.339 kb on + strand at 714.339 kb on + strand at 714.340 kb on - strand at 714.340 kb on - strand at 714.389 kb on + strand at 714.416 kb on + strand at 714.417 kb on - strand at 714.437 kb on + strand at 714.438 kb on - strand at 714.438 kb on - strand at 714.457 kb on + strand at 714.457 kb on + strand at 714.460 kb on - strand at 714.501 kb on + strand at 714.527 kb on + strand at 714.619 kb on + strand, within SM_b21077 at 714.619 kb on + strand, within SM_b21077 at 714.620 kb on - strand, within SM_b21077 at 714.620 kb on - strand, within SM_b21077 at 714.680 kb on + strand, within SM_b21077 at 714.680 kb on + strand, within SM_b21077 at 714.681 kb on - strand, within SM_b21077 at 714.749 kb on + strand, within SM_b21077 at 714.749 kb on + strand, within SM_b21077 at 714.868 kb on + strand at 714.918 kb on - strand at 714.918 kb on - strand at 714.955 kb on + strand at 714.981 kb on - strand at 715.088 kb on - strand, within SM_b21078 at 715.201 kb on - strand, within SM_b21078 at 715.201 kb on - strand, within SM_b21078 at 715.201 kb on - strand, within SM_b21078 at 715.251 kb on + strand, within SM_b21078 at 715.251 kb on + strand, within SM_b21078 at 715.251 kb on + strand, within SM_b21078 at 715.251 kb on + strand, within SM_b21078 at 715.251 kb on + strand, within SM_b21078 at 715.251 kb on + strand, within SM_b21078 at 715.252 kb on - strand, within SM_b21078 at 715.252 kb on - strand, within SM_b21078 at 715.252 kb on - strand, within SM_b21078 at 715.255 kb on + strand, within SM_b21078 at 715.256 kb on - strand, within SM_b21078 at 715.256 kb on - strand, within SM_b21078 at 715.299 kb on - strand, within SM_b21078 at 715.330 kb on + strand, within SM_b21078 at 715.330 kb on + strand, within SM_b21078 at 715.331 kb on - strand, within SM_b21078 at 715.331 kb on - strand, within SM_b21078 at 715.391 kb on - strand, within SM_b21078 at 715.391 kb on - strand, within SM_b21078 at 715.428 kb on - strand, within SM_b21078 at 715.433 kb on - strand, within SM_b21078 at 715.500 kb on + strand, within SM_b21078 at 715.500 kb on + strand, within SM_b21078 at 715.501 kb on - strand, within SM_b21078 at 715.599 kb on + strand, within SM_b21078 at 715.599 kb on + strand, within SM_b21078 at 715.665 kb on - strand, within SM_b21078 at 715.912 kb on - strand, within SM_b21078 at 715.965 kb on - strand at 715.978 kb on + strand at 715.978 kb on + strand at 715.979 kb on - strand at 715.979 kb on - strand at 715.979 kb on - strand at 715.979 kb on - strand at 716.049 kb on + strand at 716.077 kb on + strand at 716.077 kb on + strand at 716.077 kb on + strand at 716.077 kb on + strand at 716.077 kb on + strand at 716.077 kb on + strand at 716.078 kb on - strand at 716.078 kb on - strand at 716.082 kb on + strand at 716.236 kb on - strand at 716.336 kb on + strand at 716.337 kb on - strand at 716.337 kb on - strand at 716.337 kb on - strand at 716.337 kb on - strand at 716.438 kb on - strand at 716.477 kb on + strand at 716.478 kb on - strand at 716.480 kb on + strand at 716.481 kb on - strand at 716.582 kb on - strand at 716.587 kb on + strand, within SM_b21079 at 716.588 kb on - strand, within SM_b21079 at 716.588 kb on - strand, within SM_b21079 at 716.588 kb on - strand, within SM_b21079 at 716.588 kb on - strand, within SM_b21079 at 716.627 kb on + strand, within SM_b21079 at 716.648 kb on - strand, within SM_b21079 at 716.769 kb on + strand, within SM_b21079 at 716.769 kb on + strand, within SM_b21079 at 716.769 kb on + strand, within SM_b21079 at 716.832 kb on + strand, within SM_b21079 at 716.832 kb on + strand, within SM_b21079 at 717.012 kb on + strand, within SM_b21079 at 717.013 kb on - strand, within SM_b21079 at 717.013 kb on - strand, within SM_b21079 at 717.065 kb on + strand, within SM_b21079 at 717.065 kb on + strand, within SM_b21079 at 717.066 kb on - strand, within SM_b21079
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 714,042 + SM_b21076 0.65 -0.4 714,043 - SM_b21076 0.65 +0.1 714,043 - SM_b21076 0.65 -2.6 714,043 - SM_b21076 0.65 -0.3 714,045 + SM_b21076 0.65 +0.3 714,045 + SM_b21076 0.65 +0.3 714,045 + SM_b21076 0.65 -0.8 714,045 + SM_b21076 0.65 -1.1 714,045 + SM_b21076 0.65 -0.4 714,045 + SM_b21076 0.65 -0.6 714,045 + SM_b21076 0.65 -0.6 714,045 + SM_b21076 0.65 +0.4 714,046 - SM_b21076 0.65 -0.0 714,046 - SM_b21076 0.65 -0.7 714,046 - SM_b21076 0.65 -1.0 714,046 - SM_b21076 0.65 +0.2 714,046 - SM_b21076 0.65 +0.7 714,046 - SM_b21076 0.65 +0.2 714,079 + SM_b21076 0.68 -1.7 714,079 + SM_b21076 0.68 -0.3 714,079 + SM_b21076 0.68 -0.3 714,092 - SM_b21076 0.69 +0.5 714,092 - SM_b21076 0.69 -2.3 714,153 - SM_b21076 0.75 -0.2 714,225 - SM_b21076 0.81 -1.4 714,339 + +0.6 714,339 + +0.9 714,340 - +0.1 714,340 - -0.4 714,389 + -1.8 714,416 + -0.5 714,417 - -1.8 714,437 + -0.3 714,438 - +0.7 714,438 - -0.7 714,457 + +0.4 714,457 + +0.6 714,460 - -2.0 714,501 + +0.1 714,527 + +0.2 714,619 + SM_b21077 0.11 +1.0 714,619 + SM_b21077 0.11 +0.2 714,620 - SM_b21077 0.11 -0.6 714,620 - SM_b21077 0.11 +1.2 714,680 + SM_b21077 0.32 +2.3 714,680 + SM_b21077 0.32 +0.6 714,681 - SM_b21077 0.32 +1.3 714,749 + SM_b21077 0.56 -0.1 714,749 + SM_b21077 0.56 +0.3 714,868 + -0.8 714,918 - +1.0 714,918 - +0.7 714,955 + +0.1 714,981 - -0.2 715,088 - SM_b21078 0.18 -1.7 715,201 - SM_b21078 0.27 -0.7 715,201 - SM_b21078 0.27 +0.4 715,201 - SM_b21078 0.27 +0.7 715,251 + SM_b21078 0.31 -0.1 715,251 + SM_b21078 0.31 -0.3 715,251 + SM_b21078 0.31 +0.9 715,251 + SM_b21078 0.31 -0.2 715,251 + SM_b21078 0.31 -0.2 715,251 + SM_b21078 0.31 -3.2 715,252 - SM_b21078 0.31 +0.2 715,252 - SM_b21078 0.31 +1.4 715,252 - SM_b21078 0.31 -0.3 715,255 + SM_b21078 0.31 +0.6 715,256 - SM_b21078 0.31 -2.5 715,256 - SM_b21078 0.31 +0.8 715,299 - SM_b21078 0.35 +0.3 715,330 + SM_b21078 0.38 +0.0 715,330 + SM_b21078 0.38 +0.0 715,331 - SM_b21078 0.38 +0.1 715,331 - SM_b21078 0.38 +0.7 715,391 - SM_b21078 0.43 -0.0 715,391 - SM_b21078 0.43 -1.2 715,428 - SM_b21078 0.46 -0.8 715,433 - SM_b21078 0.46 -0.5 715,500 + SM_b21078 0.52 -0.6 715,500 + SM_b21078 0.52 +0.1 715,501 - SM_b21078 0.52 +0.5 715,599 + SM_b21078 0.60 +0.1 715,599 + SM_b21078 0.60 -2.9 715,665 - SM_b21078 0.65 +0.1 715,912 - SM_b21078 0.86 +0.4 715,965 - +3.6 715,978 + +2.3 715,978 + +1.7 715,979 - +0.5 715,979 - +0.3 715,979 - -2.2 715,979 - -1.8 716,049 + +2.0 716,077 + +1.1 716,077 + -0.7 716,077 + +0.4 716,077 + +1.0 716,077 + +0.2 716,077 + -0.5 716,078 - -0.3 716,078 - -1.1 716,082 + +0.4 716,236 - -0.1 716,336 + +1.5 716,337 - -0.7 716,337 - -1.0 716,337 - -0.8 716,337 - +0.6 716,438 - -1.8 716,477 + +0.6 716,478 - -0.1 716,480 + -0.3 716,481 - +0.4 716,582 - -0.9 716,587 + SM_b21079 0.10 -0.2 716,588 - SM_b21079 0.10 +0.7 716,588 - SM_b21079 0.10 -3.5 716,588 - SM_b21079 0.10 +0.7 716,588 - SM_b21079 0.10 +0.2 716,627 + SM_b21079 0.16 -1.9 716,648 - SM_b21079 0.18 -0.7 716,769 + SM_b21079 0.35 +0.1 716,769 + SM_b21079 0.35 +0.9 716,769 + SM_b21079 0.35 -0.2 716,832 + SM_b21079 0.44 -0.8 716,832 + SM_b21079 0.44 +1.5 717,012 + SM_b21079 0.68 -0.4 717,013 - SM_b21079 0.68 -1.1 717,013 - SM_b21079 0.68 +0.3 717,065 + SM_b21079 0.75 +2.0 717,065 + SM_b21079 0.75 -0.5 717,066 - SM_b21079 0.76 -0.6
Or see this region's nucleotide sequence