Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21047 and SM_b21048 are separated by 126 nucleotides SM_b21048 and SM_b21049 are separated by 45 nucleotides SM_b21049 and SM_b21050 are separated by 212 nucleotides
SM_b21047: SM_b21047 - hypothetical protein, at 679,969 to 680,235
_b21047
SM_b21048: SM_b21048 - hypothetical protein, at 680,362 to 681,807
_b21048
SM_b21049: SM_b21049 - hypothetical protein, at 681,853 to 682,011
_b21049
SM_b21050: SM_b21050 - PST type surface saccharide translocase, ExoT protein, at 682,224 to 683,777
_b21050
Position (kb) 680
681
682 Strain fitness (log2 ratio) -2
-1
0
1
2 at 679.450 kb on + strand at 679.450 kb on + strand at 679.451 kb on - strand at 679.451 kb on - strand at 679.452 kb on + strand at 679.453 kb on - strand at 679.553 kb on - strand at 679.662 kb on - strand at 679.666 kb on + strand at 679.785 kb on + strand at 679.804 kb on - strand at 679.807 kb on + strand at 679.808 kb on - strand at 679.808 kb on - strand at 679.808 kb on - strand at 679.808 kb on - strand at 679.808 kb on - strand at 679.862 kb on + strand at 679.862 kb on + strand at 679.863 kb on - strand at 679.863 kb on - strand at 679.893 kb on - strand at 679.912 kb on - strand at 679.919 kb on - strand at 679.948 kb on + strand at 679.971 kb on - strand at 679.981 kb on - strand at 679.981 kb on - strand at 680.061 kb on + strand, within SM_b21047 at 680.101 kb on - strand, within SM_b21047 at 680.142 kb on + strand, within SM_b21047 at 680.143 kb on - strand, within SM_b21047 at 680.143 kb on - strand, within SM_b21047 at 680.360 kb on + strand at 680.360 kb on + strand at 680.363 kb on + strand at 680.363 kb on + strand at 680.364 kb on - strand at 680.364 kb on - strand at 680.410 kb on + strand at 680.410 kb on + strand at 680.411 kb on - strand at 680.411 kb on - strand at 680.411 kb on - strand at 680.411 kb on - strand at 680.602 kb on + strand, within SM_b21048 at 680.623 kb on + strand, within SM_b21048 at 680.624 kb on - strand, within SM_b21048 at 680.626 kb on - strand, within SM_b21048 at 680.650 kb on - strand, within SM_b21048 at 680.763 kb on + strand, within SM_b21048 at 680.763 kb on + strand, within SM_b21048 at 680.763 kb on + strand, within SM_b21048 at 680.766 kb on + strand, within SM_b21048 at 680.766 kb on + strand, within SM_b21048 at 680.775 kb on - strand, within SM_b21048 at 680.864 kb on + strand, within SM_b21048 at 680.864 kb on + strand, within SM_b21048 at 680.865 kb on - strand, within SM_b21048 at 681.005 kb on + strand, within SM_b21048 at 681.093 kb on - strand, within SM_b21048 at 681.093 kb on - strand, within SM_b21048 at 681.098 kb on + strand, within SM_b21048 at 681.206 kb on + strand, within SM_b21048 at 681.207 kb on - strand, within SM_b21048 at 681.294 kb on + strand, within SM_b21048 at 681.294 kb on + strand, within SM_b21048 at 681.294 kb on + strand, within SM_b21048 at 681.321 kb on + strand, within SM_b21048 at 681.349 kb on + strand, within SM_b21048 at 681.359 kb on - strand, within SM_b21048 at 681.359 kb on - strand, within SM_b21048 at 681.359 kb on - strand, within SM_b21048 at 681.392 kb on + strand, within SM_b21048 at 681.472 kb on + strand, within SM_b21048 at 681.472 kb on + strand, within SM_b21048 at 681.473 kb on - strand, within SM_b21048 at 681.527 kb on + strand, within SM_b21048 at 681.528 kb on - strand, within SM_b21048 at 681.528 kb on - strand, within SM_b21048 at 681.528 kb on - strand, within SM_b21048 at 681.647 kb on + strand, within SM_b21048 at 681.647 kb on + strand, within SM_b21048 at 681.648 kb on - strand, within SM_b21048 at 681.648 kb on - strand, within SM_b21048 at 681.749 kb on + strand at 681.750 kb on - strand at 681.753 kb on - strand at 681.753 kb on - strand at 681.753 kb on - strand at 681.753 kb on - strand at 681.753 kb on - strand at 681.758 kb on - strand at 681.758 kb on - strand at 681.758 kb on - strand at 681.761 kb on - strand at 681.782 kb on - strand at 681.855 kb on - strand at 681.920 kb on + strand, within SM_b21049 at 681.921 kb on - strand, within SM_b21049 at 681.921 kb on - strand, within SM_b21049 at 681.942 kb on - strand, within SM_b21049 at 682.037 kb on - strand at 682.037 kb on - strand at 682.083 kb on - strand at 682.128 kb on + strand at 682.128 kb on + strand at 682.129 kb on - strand at 682.209 kb on + strand at 682.209 kb on + strand at 682.231 kb on + strand at 682.232 kb on - strand at 682.232 kb on - strand at 682.232 kb on - strand at 682.232 kb on - strand at 682.252 kb on + strand at 682.265 kb on - strand at 682.292 kb on - strand at 682.441 kb on + strand, within SM_b21050 at 682.441 kb on + strand, within SM_b21050 at 682.442 kb on - strand, within SM_b21050 at 682.442 kb on - strand, within SM_b21050 at 682.495 kb on + strand, within SM_b21050 at 682.496 kb on - strand, within SM_b21050 at 682.496 kb on - strand, within SM_b21050 at 682.693 kb on + strand, within SM_b21050 at 682.694 kb on - strand, within SM_b21050
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 679,450 + +1.9 679,450 + -1.9 679,451 - +1.2 679,451 - -0.8 679,452 + -0.3 679,453 - +0.6 679,553 - +0.3 679,662 - +1.3 679,666 + -0.4 679,785 + +0.6 679,804 - +0.2 679,807 + -1.1 679,808 - +0.3 679,808 - +0.5 679,808 - -0.2 679,808 - +0.2 679,808 - -0.3 679,862 + -0.0 679,862 + -0.1 679,863 - -1.3 679,863 - -0.3 679,893 - -1.6 679,912 - -2.1 679,919 - +1.0 679,948 + +0.1 679,971 - +0.5 679,981 - -2.4 679,981 - -0.5 680,061 + SM_b21047 0.34 +0.2 680,101 - SM_b21047 0.49 -0.2 680,142 + SM_b21047 0.65 -1.5 680,143 - SM_b21047 0.65 +0.7 680,143 - SM_b21047 0.65 -0.2 680,360 + +0.9 680,360 + +1.1 680,363 + +0.1 680,363 + +0.3 680,364 - -0.7 680,364 - +0.5 680,410 + -0.8 680,410 + -0.1 680,411 - +0.0 680,411 - -0.4 680,411 - +0.4 680,411 - +2.1 680,602 + SM_b21048 0.17 -2.4 680,623 + SM_b21048 0.18 -0.3 680,624 - SM_b21048 0.18 +1.1 680,626 - SM_b21048 0.18 +0.4 680,650 - SM_b21048 0.20 -0.4 680,763 + SM_b21048 0.28 +0.4 680,763 + SM_b21048 0.28 -2.3 680,763 + SM_b21048 0.28 -1.1 680,766 + SM_b21048 0.28 -0.4 680,766 + SM_b21048 0.28 +0.7 680,775 - SM_b21048 0.29 -1.3 680,864 + SM_b21048 0.35 +0.0 680,864 + SM_b21048 0.35 -0.3 680,865 - SM_b21048 0.35 +0.0 681,005 + SM_b21048 0.44 -0.8 681,093 - SM_b21048 0.51 -1.0 681,093 - SM_b21048 0.51 -1.3 681,098 + SM_b21048 0.51 +0.4 681,206 + SM_b21048 0.58 +2.1 681,207 - SM_b21048 0.58 +0.7 681,294 + SM_b21048 0.64 +0.0 681,294 + SM_b21048 0.64 -1.8 681,294 + SM_b21048 0.64 +0.6 681,321 + SM_b21048 0.66 -0.4 681,349 + SM_b21048 0.68 -1.5 681,359 - SM_b21048 0.69 -2.0 681,359 - SM_b21048 0.69 -0.6 681,359 - SM_b21048 0.69 -0.3 681,392 + SM_b21048 0.71 -0.2 681,472 + SM_b21048 0.77 -1.1 681,472 + SM_b21048 0.77 -0.3 681,473 - SM_b21048 0.77 -0.9 681,527 + SM_b21048 0.81 -0.2 681,528 - SM_b21048 0.81 +0.8 681,528 - SM_b21048 0.81 -0.3 681,528 - SM_b21048 0.81 -1.9 681,647 + SM_b21048 0.89 +1.3 681,647 + SM_b21048 0.89 -0.3 681,648 - SM_b21048 0.89 +0.5 681,648 - SM_b21048 0.89 -0.3 681,749 + +0.2 681,750 - +1.3 681,753 - -0.7 681,753 - +0.7 681,753 - +0.1 681,753 - +1.3 681,753 - -2.1 681,758 - -1.4 681,758 - -0.7 681,758 - +0.6 681,761 - +0.1 681,782 - -0.6 681,855 - -0.5 681,920 + SM_b21049 0.42 -1.4 681,921 - SM_b21049 0.43 +0.9 681,921 - SM_b21049 0.43 +0.1 681,942 - SM_b21049 0.56 +1.9 682,037 - +1.9 682,037 - -0.5 682,083 - +0.8 682,128 + +0.7 682,128 + -0.3 682,129 - +0.9 682,209 + +0.1 682,209 + +0.3 682,231 + +1.2 682,232 - -2.0 682,232 - +0.7 682,232 - +0.3 682,232 - +0.2 682,252 + +0.3 682,265 - -0.1 682,292 - +0.2 682,441 + SM_b21050 0.14 +0.7 682,441 + SM_b21050 0.14 +0.3 682,442 - SM_b21050 0.14 +1.2 682,442 - SM_b21050 0.14 -0.1 682,495 + SM_b21050 0.17 +0.1 682,496 - SM_b21050 0.18 -0.1 682,496 - SM_b21050 0.18 +0.1 682,693 + SM_b21050 0.30 -0.6 682,694 - SM_b21050 0.30 -0.9
Or see this region's nucleotide sequence