Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21016

Experiment: Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21015 and SM_b21016 are separated by 64 nucleotidesSM_b21016 and SM_b21017 are separated by 2 nucleotides SM_b21015: SM_b21015 - short-chain dehydrogenase, at 638,049 to 639,299 _b21015 SM_b21016: SM_b21016 - sugar ABC transporter substrate-binding protein, at 639,364 to 640,395 _b21016 SM_b21017: SM_b21017 - sugar ABC transporter permease, at 640,398 to 641,411 _b21017 Position (kb) 639 640 641Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 638.412 kb on + strand, within SM_b21015at 638.412 kb on + strand, within SM_b21015at 638.501 kb on - strand, within SM_b21015at 638.674 kb on + strand, within SM_b21015at 638.727 kb on + strand, within SM_b21015at 638.727 kb on + strand, within SM_b21015at 638.727 kb on + strand, within SM_b21015at 638.728 kb on - strand, within SM_b21015at 638.728 kb on - strand, within SM_b21015at 638.728 kb on - strand, within SM_b21015at 638.756 kb on - strand, within SM_b21015at 638.800 kb on + strand, within SM_b21015at 638.801 kb on - strand, within SM_b21015at 638.809 kb on + strand, within SM_b21015at 638.810 kb on - strand, within SM_b21015at 638.810 kb on - strand, within SM_b21015at 638.827 kb on + strand, within SM_b21015at 638.828 kb on - strand, within SM_b21015at 638.828 kb on - strand, within SM_b21015at 638.828 kb on - strand, within SM_b21015at 638.828 kb on - strand, within SM_b21015at 638.905 kb on + strand, within SM_b21015at 638.906 kb on - strand, within SM_b21015at 638.916 kb on + strand, within SM_b21015at 638.916 kb on + strand, within SM_b21015at 638.917 kb on - strand, within SM_b21015at 638.988 kb on + strand, within SM_b21015at 638.988 kb on + strand, within SM_b21015at 638.988 kb on + strand, within SM_b21015at 638.989 kb on - strand, within SM_b21015at 638.989 kb on - strand, within SM_b21015at 639.138 kb on + strand, within SM_b21015at 639.139 kb on - strand, within SM_b21015at 639.139 kb on - strand, within SM_b21015at 639.139 kb on - strand, within SM_b21015at 639.208 kb on + strandat 639.208 kb on + strandat 639.208 kb on + strandat 639.209 kb on - strandat 639.209 kb on - strandat 639.259 kb on - strandat 639.446 kb on + strandat 639.452 kb on + strandat 639.452 kb on + strandat 639.453 kb on - strandat 639.460 kb on + strandat 639.461 kb on - strandat 639.461 kb on - strandat 639.624 kb on + strand, within SM_b21016at 639.624 kb on + strand, within SM_b21016at 639.625 kb on - strand, within SM_b21016at 639.758 kb on + strand, within SM_b21016at 639.758 kb on + strand, within SM_b21016at 639.759 kb on - strand, within SM_b21016at 639.759 kb on - strand, within SM_b21016at 639.772 kb on - strand, within SM_b21016at 639.803 kb on + strand, within SM_b21016at 639.809 kb on + strand, within SM_b21016at 639.810 kb on - strand, within SM_b21016at 639.815 kb on + strand, within SM_b21016at 640.011 kb on - strand, within SM_b21016at 640.011 kb on - strand, within SM_b21016at 640.013 kb on + strand, within SM_b21016at 640.013 kb on + strand, within SM_b21016at 640.014 kb on - strand, within SM_b21016at 640.014 kb on - strand, within SM_b21016at 640.014 kb on - strand, within SM_b21016at 640.136 kb on + strand, within SM_b21016at 640.136 kb on + strand, within SM_b21016at 640.137 kb on - strand, within SM_b21016at 640.205 kb on + strand, within SM_b21016at 640.205 kb on + strand, within SM_b21016at 640.205 kb on + strand, within SM_b21016at 640.206 kb on - strand, within SM_b21016at 640.206 kb on - strand, within SM_b21016at 640.206 kb on - strand, within SM_b21016at 640.206 kb on - strand, within SM_b21016at 640.630 kb on + strand, within SM_b21017at 640.630 kb on + strand, within SM_b21017at 640.630 kb on + strand, within SM_b21017at 640.631 kb on - strand, within SM_b21017at 640.714 kb on + strand, within SM_b21017at 640.765 kb on + strand, within SM_b21017at 640.765 kb on + strand, within SM_b21017at 640.765 kb on + strand, within SM_b21017at 640.766 kb on - strand, within SM_b21017at 640.766 kb on - strand, within SM_b21017at 641.070 kb on + strand, within SM_b21017at 641.071 kb on - strand, within SM_b21017at 641.164 kb on + strand, within SM_b21017at 641.164 kb on + strand, within SM_b21017at 641.165 kb on - strand, within SM_b21017at 641.165 kb on - strand, within SM_b21017at 641.196 kb on - strand, within SM_b21017at 641.241 kb on + strand, within SM_b21017at 641.312 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM
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638,412 + SM_b21015 0.29 -0.5
638,412 + SM_b21015 0.29 +4.8
638,501 - SM_b21015 0.36 +0.1
638,674 + SM_b21015 0.50 -0.1
638,727 + SM_b21015 0.54 -1.0
638,727 + SM_b21015 0.54 +0.0
638,727 + SM_b21015 0.54 -0.5
638,728 - SM_b21015 0.54 -0.5
638,728 - SM_b21015 0.54 -0.0
638,728 - SM_b21015 0.54 +0.1
638,756 - SM_b21015 0.57 -1.2
638,800 + SM_b21015 0.60 +0.6
638,801 - SM_b21015 0.60 -0.6
638,809 + SM_b21015 0.61 +1.7
638,810 - SM_b21015 0.61 -1.5
638,810 - SM_b21015 0.61 -1.7
638,827 + SM_b21015 0.62 +0.0
638,828 - SM_b21015 0.62 +0.3
638,828 - SM_b21015 0.62 +0.0
638,828 - SM_b21015 0.62 +1.1
638,828 - SM_b21015 0.62 -0.1
638,905 + SM_b21015 0.68 -0.7
638,906 - SM_b21015 0.69 -0.7
638,916 + SM_b21015 0.69 -2.8
638,916 + SM_b21015 0.69 -0.4
638,917 - SM_b21015 0.69 +0.1
638,988 + SM_b21015 0.75 -0.2
638,988 + SM_b21015 0.75 -0.0
638,988 + SM_b21015 0.75 +0.1
638,989 - SM_b21015 0.75 -2.3
638,989 - SM_b21015 0.75 -1.7
639,138 + SM_b21015 0.87 +0.0
639,139 - SM_b21015 0.87 -0.5
639,139 - SM_b21015 0.87 +0.6
639,139 - SM_b21015 0.87 +1.3
639,208 + +2.4
639,208 + -0.5
639,208 + -0.0
639,209 - -1.5
639,209 - -1.9
639,259 - -0.7
639,446 + +0.4
639,452 + -0.6
639,452 + +0.2
639,453 - +0.9
639,460 + -0.2
639,461 - +0.3
639,461 - +1.0
639,624 + SM_b21016 0.25 +1.0
639,624 + SM_b21016 0.25 +3.5
639,625 - SM_b21016 0.25 -3.0
639,758 + SM_b21016 0.38 +0.7
639,758 + SM_b21016 0.38 +0.4
639,759 - SM_b21016 0.38 +0.5
639,759 - SM_b21016 0.38 +0.3
639,772 - SM_b21016 0.40 +1.0
639,803 + SM_b21016 0.43 +0.4
639,809 + SM_b21016 0.43 -0.1
639,810 - SM_b21016 0.43 +0.2
639,815 + SM_b21016 0.44 +0.5
640,011 - SM_b21016 0.63 +0.7
640,011 - SM_b21016 0.63 -1.8
640,013 + SM_b21016 0.63 -1.3
640,013 + SM_b21016 0.63 +0.6
640,014 - SM_b21016 0.63 +0.7
640,014 - SM_b21016 0.63 -0.3
640,014 - SM_b21016 0.63 +0.2
640,136 + SM_b21016 0.75 +0.3
640,136 + SM_b21016 0.75 -0.7
640,137 - SM_b21016 0.75 -0.6
640,205 + SM_b21016 0.81 -2.7
640,205 + SM_b21016 0.81 -0.8
640,205 + SM_b21016 0.81 +0.9
640,206 - SM_b21016 0.82 -0.6
640,206 - SM_b21016 0.82 +1.2
640,206 - SM_b21016 0.82 -0.4
640,206 - SM_b21016 0.82 +0.8
640,630 + SM_b21017 0.23 -0.3
640,630 + SM_b21017 0.23 -0.6
640,630 + SM_b21017 0.23 -0.4
640,631 - SM_b21017 0.23 -1.2
640,714 + SM_b21017 0.31 +3.4
640,765 + SM_b21017 0.36 -0.5
640,765 + SM_b21017 0.36 +0.9
640,765 + SM_b21017 0.36 +0.3
640,766 - SM_b21017 0.36 -0.2
640,766 - SM_b21017 0.36 +0.1
641,070 + SM_b21017 0.66 -0.2
641,071 - SM_b21017 0.66 -0.8
641,164 + SM_b21017 0.76 +0.6
641,164 + SM_b21017 0.76 -1.0
641,165 - SM_b21017 0.76 +0.8
641,165 - SM_b21017 0.76 +0.7
641,196 - SM_b21017 0.79 -0.1
641,241 + SM_b21017 0.83 -0.8
641,312 + +0.3

Or see this region's nucleotide sequence