Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20975 and SM_b20976 are separated by 73 nucleotides SM_b20976 and SM_b20977 are separated by 30 nucleotides
SM_b20975: SM_b20975 - amino acid uptake ABC transporter permease, at 1,207,152 to 1,208,801
_b20975
SM_b20976: SM_b20976 - amino acid uptake ABC transporter substrate-binding protein precursor, at 1,208,875 to 1,209,621
_b20976
SM_b20977: SM_b20977 - LacI family transcriptional regulator, at 1,209,652 to 1,210,719
_b20977
Position (kb)
1208
1209
1210 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1207.957 kb on - strand, within SM_b20975 at 1207.957 kb on - strand, within SM_b20975 at 1207.957 kb on - strand, within SM_b20975 at 1208.020 kb on + strand, within SM_b20975 at 1208.021 kb on - strand, within SM_b20975 at 1208.021 kb on - strand, within SM_b20975 at 1208.111 kb on - strand, within SM_b20975 at 1208.111 kb on - strand, within SM_b20975 at 1208.164 kb on + strand, within SM_b20975 at 1208.432 kb on + strand, within SM_b20975 at 1208.433 kb on - strand, within SM_b20975 at 1208.498 kb on - strand, within SM_b20975 at 1208.498 kb on - strand, within SM_b20975 at 1208.734 kb on + strand at 1208.735 kb on - strand at 1208.735 kb on - strand at 1208.735 kb on - strand at 1208.876 kb on + strand at 1208.876 kb on + strand at 1208.877 kb on - strand at 1209.137 kb on + strand, within SM_b20976 at 1209.271 kb on + strand, within SM_b20976 at 1209.271 kb on + strand, within SM_b20976 at 1209.293 kb on + strand, within SM_b20976 at 1209.294 kb on - strand, within SM_b20976 at 1209.294 kb on - strand, within SM_b20976 at 1209.294 kb on - strand, within SM_b20976 at 1209.461 kb on - strand, within SM_b20976 at 1209.538 kb on - strand, within SM_b20976 at 1209.667 kb on + strand at 1209.806 kb on + strand, within SM_b20977 at 1209.806 kb on + strand, within SM_b20977 at 1209.807 kb on - strand, within SM_b20977 at 1209.833 kb on + strand, within SM_b20977 at 1209.834 kb on - strand, within SM_b20977 at 1209.834 kb on - strand, within SM_b20977 at 1210.011 kb on + strand, within SM_b20977 at 1210.313 kb on - strand, within SM_b20977 at 1210.403 kb on + strand, within SM_b20977 at 1210.450 kb on - strand, within SM_b20977 at 1210.450 kb on - strand, within SM_b20977 at 1210.450 kb on - strand, within SM_b20977 at 1210.451 kb on + strand, within SM_b20977 at 1210.452 kb on - strand, within SM_b20977 at 1210.452 kb on - strand, within SM_b20977 at 1210.472 kb on + strand, within SM_b20977 at 1210.472 kb on + strand, within SM_b20977 at 1210.472 kb on + strand, within SM_b20977 at 1210.472 kb on + strand, within SM_b20977 at 1210.472 kb on + strand, within SM_b20977 at 1210.472 kb on + strand, within SM_b20977 at 1210.473 kb on - strand, within SM_b20977
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 1,207,957 - SM_b20975 0.49 +1.6 1,207,957 - SM_b20975 0.49 -0.8 1,207,957 - SM_b20975 0.49 -0.1 1,208,020 + SM_b20975 0.53 -0.4 1,208,021 - SM_b20975 0.53 +3.2 1,208,021 - SM_b20975 0.53 -2.7 1,208,111 - SM_b20975 0.58 -0.8 1,208,111 - SM_b20975 0.58 -1.1 1,208,164 + SM_b20975 0.61 +0.1 1,208,432 + SM_b20975 0.78 +1.5 1,208,433 - SM_b20975 0.78 -1.3 1,208,498 - SM_b20975 0.82 -2.8 1,208,498 - SM_b20975 0.82 +0.1 1,208,734 + +0.1 1,208,735 - -0.5 1,208,735 - -1.1 1,208,735 - +0.6 1,208,876 + -3.3 1,208,876 + +0.1 1,208,877 - -1.5 1,209,137 + SM_b20976 0.35 +0.2 1,209,271 + SM_b20976 0.53 +0.9 1,209,271 + SM_b20976 0.53 +0.7 1,209,293 + SM_b20976 0.56 +3.7 1,209,294 - SM_b20976 0.56 +0.0 1,209,294 - SM_b20976 0.56 -0.5 1,209,294 - SM_b20976 0.56 -0.0 1,209,461 - SM_b20976 0.78 -2.2 1,209,538 - SM_b20976 0.89 -0.1 1,209,667 + +0.5 1,209,806 + SM_b20977 0.14 +1.5 1,209,806 + SM_b20977 0.14 -0.2 1,209,807 - SM_b20977 0.15 -0.2 1,209,833 + SM_b20977 0.17 +0.3 1,209,834 - SM_b20977 0.17 -1.2 1,209,834 - SM_b20977 0.17 -1.3 1,210,011 + SM_b20977 0.34 +0.3 1,210,313 - SM_b20977 0.62 +0.1 1,210,403 + SM_b20977 0.70 -0.3 1,210,450 - SM_b20977 0.75 -0.1 1,210,450 - SM_b20977 0.75 -0.6 1,210,450 - SM_b20977 0.75 +0.3 1,210,451 + SM_b20977 0.75 -3.1 1,210,452 - SM_b20977 0.75 -0.9 1,210,452 - SM_b20977 0.75 -0.6 1,210,472 + SM_b20977 0.77 -0.2 1,210,472 + SM_b20977 0.77 -0.1 1,210,472 + SM_b20977 0.77 +1.0 1,210,472 + SM_b20977 0.77 +0.3 1,210,472 + SM_b20977 0.77 -1.4 1,210,472 + SM_b20977 0.77 -0.5 1,210,473 - SM_b20977 0.77 -0.1
Or see this region's nucleotide sequence