Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20945 and SM_b20946 are separated by 52 nucleotides SM_b20946 and SM_b20947 are separated by 772 nucleotides
SM_b20945: SM_b20945 - hypothetical protein, at 1,171,541 to 1,172,806
_b20945
SM_b20946: SM_b20946 - galactosyltransferase, at 1,172,859 to 1,173,539
_b20946
SM_b20947: SM_b20947 - posttranscriptional regulator, repressor protein, at 1,174,312 to 1,174,608
_b20947
Position (kb)
1172
1173
1174 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1172.765 kb on - strand at 1172.945 kb on - strand, within SM_b20946 at 1172.945 kb on - strand, within SM_b20946 at 1172.945 kb on - strand, within SM_b20946 at 1172.974 kb on + strand, within SM_b20946 at 1173.037 kb on + strand, within SM_b20946 at 1173.158 kb on + strand, within SM_b20946 at 1173.230 kb on - strand, within SM_b20946 at 1173.291 kb on - strand, within SM_b20946 at 1173.291 kb on - strand, within SM_b20946 at 1173.346 kb on + strand, within SM_b20946 at 1173.347 kb on - strand, within SM_b20946 at 1173.347 kb on - strand, within SM_b20946 at 1173.461 kb on + strand, within SM_b20946 at 1173.501 kb on - strand at 1173.555 kb on + strand at 1173.556 kb on - strand at 1173.596 kb on - strand at 1173.606 kb on + strand at 1173.736 kb on + strand at 1173.741 kb on + strand at 1173.741 kb on + strand at 1173.788 kb on - strand at 1173.805 kb on - strand at 1173.810 kb on + strand at 1173.813 kb on + strand at 1173.999 kb on + strand at 1173.999 kb on + strand at 1174.000 kb on - strand at 1174.046 kb on + strand at 1174.047 kb on - strand at 1174.047 kb on - strand at 1174.047 kb on - strand at 1174.179 kb on + strand at 1174.180 kb on - strand at 1174.180 kb on - strand at 1174.180 kb on - strand at 1174.200 kb on - strand at 1174.232 kb on + strand at 1174.235 kb on + strand at 1174.237 kb on + strand at 1174.237 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 1,172,765 - -2.7 1,172,945 - SM_b20946 0.13 -0.3 1,172,945 - SM_b20946 0.13 -1.5 1,172,945 - SM_b20946 0.13 -0.6 1,172,974 + SM_b20946 0.17 -1.3 1,173,037 + SM_b20946 0.26 -1.2 1,173,158 + SM_b20946 0.44 -1.5 1,173,230 - SM_b20946 0.54 -2.9 1,173,291 - SM_b20946 0.63 -1.4 1,173,291 - SM_b20946 0.63 -1.5 1,173,346 + SM_b20946 0.72 -1.7 1,173,347 - SM_b20946 0.72 -2.2 1,173,347 - SM_b20946 0.72 -4.4 1,173,461 + SM_b20946 0.88 -2.1 1,173,501 - -2.3 1,173,555 + -1.2 1,173,556 - -1.6 1,173,596 - -2.2 1,173,606 + -1.6 1,173,736 + -1.6 1,173,741 + -1.4 1,173,741 + -3.2 1,173,788 - -4.7 1,173,805 - -1.3 1,173,810 + -0.9 1,173,813 + -0.3 1,173,999 + -2.3 1,173,999 + -0.8 1,174,000 - -1.6 1,174,046 + -1.1 1,174,047 - -0.8 1,174,047 - -1.4 1,174,047 - +0.2 1,174,179 + -1.2 1,174,180 - +1.3 1,174,180 - +0.4 1,174,180 - +0.9 1,174,200 - +1.2 1,174,232 + -2.3 1,174,235 + +1.0 1,174,237 + +0.1 1,174,237 + -1.8
Or see this region's nucleotide sequence