Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20941 and SM_b20942 are separated by 532 nucleotides SM_b20942 and SM_b20943 are separated by 85 nucleotides
SM_b20941: SM_b20941 - MsbA-like saccharide exporting ABC transporter ATP-binding/permease subunits, at 1,165,803 to 1,167,617
_b20941
SM_b20942: SM_b20942 - UDP glucose 4-epimerase, at 1,168,150 to 1,169,136
_b20942
SM_b20943: SM_b20943 - acetyltransferase, at 1,169,222 to 1,170,175
_b20943
Position (kb)
1168
1169
1170 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1167.476 kb on + strand at 1167.477 kb on - strand at 1167.511 kb on - strand at 1167.608 kb on + strand at 1167.617 kb on + strand at 1167.617 kb on + strand at 1167.617 kb on + strand at 1167.618 kb on - strand at 1167.719 kb on - strand at 1167.811 kb on - strand at 1167.835 kb on + strand at 1167.836 kb on - strand at 1167.871 kb on - strand at 1167.902 kb on + strand at 1167.969 kb on + strand at 1168.190 kb on - strand at 1168.423 kb on + strand, within SM_b20942 at 1168.554 kb on + strand, within SM_b20942 at 1168.628 kb on - strand, within SM_b20942 at 1168.628 kb on - strand, within SM_b20942 at 1168.646 kb on + strand, within SM_b20942 at 1168.658 kb on - strand, within SM_b20942 at 1168.790 kb on - strand, within SM_b20942 at 1168.822 kb on + strand, within SM_b20942 at 1168.822 kb on + strand, within SM_b20942 at 1168.825 kb on - strand, within SM_b20942 at 1168.825 kb on - strand, within SM_b20942 at 1168.825 kb on - strand, within SM_b20942 at 1168.870 kb on + strand, within SM_b20942 at 1169.055 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 1,167,476 + +0.4 1,167,477 - -0.1 1,167,511 - -0.2 1,167,608 + -0.3 1,167,617 + -0.3 1,167,617 + -1.2 1,167,617 + +0.2 1,167,618 - -1.6 1,167,719 - -0.4 1,167,811 - -0.1 1,167,835 + +0.1 1,167,836 - -0.4 1,167,871 - +0.2 1,167,902 + +0.4 1,167,969 + +0.3 1,168,190 - -2.8 1,168,423 + SM_b20942 0.28 +0.0 1,168,554 + SM_b20942 0.41 -3.3 1,168,628 - SM_b20942 0.48 +0.0 1,168,628 - SM_b20942 0.48 -1.7 1,168,646 + SM_b20942 0.50 -2.4 1,168,658 - SM_b20942 0.51 -1.2 1,168,790 - SM_b20942 0.65 -2.0 1,168,822 + SM_b20942 0.68 -0.2 1,168,822 + SM_b20942 0.68 -3.1 1,168,825 - SM_b20942 0.68 -2.0 1,168,825 - SM_b20942 0.68 -2.1 1,168,825 - SM_b20942 0.68 -1.4 1,168,870 + SM_b20942 0.73 -0.5 1,169,055 - +0.0
Or see this region's nucleotide sequence