Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20880 and SM_b20881 are separated by 257 nucleotides SM_b20881 and SM_b20882 are separated by 48 nucleotides SM_b20882 and SM_b20883 are separated by 183 nucleotides
SM_b20880: SM_b20880 - ATP-dependent RNA helicase, at 1,286,262 to 1,287,773
_b20880
SM_b20881: SM_b20881 - hypothetical protein, at 1,288,031 to 1,288,492
_b20881
SM_b20882: SM_b20882 - hypothetical protein, at 1,288,541 to 1,288,990
_b20882
SM_b20883: SM_b20883 - hypothetical protein, at 1,289,174 to 1,289,641
_b20883
Position (kb)
1288
1289 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1287.216 kb on + strand, within SM_b20880 at 1287.216 kb on + strand, within SM_b20880 at 1287.217 kb on - strand, within SM_b20880 at 1287.217 kb on - strand, within SM_b20880 at 1287.222 kb on + strand, within SM_b20880 at 1287.223 kb on - strand, within SM_b20880 at 1287.223 kb on - strand, within SM_b20880 at 1287.223 kb on - strand, within SM_b20880 at 1287.249 kb on + strand, within SM_b20880 at 1287.249 kb on + strand, within SM_b20880 at 1287.249 kb on + strand, within SM_b20880 at 1287.250 kb on - strand, within SM_b20880 at 1287.803 kb on - strand at 1287.903 kb on - strand at 1287.925 kb on - strand at 1287.958 kb on + strand at 1287.987 kb on + strand at 1287.988 kb on - strand at 1288.056 kb on + strand at 1288.057 kb on - strand at 1288.057 kb on - strand at 1288.099 kb on - strand, within SM_b20881 at 1288.099 kb on - strand, within SM_b20881 at 1288.211 kb on + strand, within SM_b20881 at 1288.228 kb on - strand, within SM_b20881 at 1288.228 kb on - strand, within SM_b20881 at 1288.249 kb on + strand, within SM_b20881 at 1288.249 kb on + strand, within SM_b20881 at 1288.282 kb on - strand, within SM_b20881 at 1288.319 kb on + strand, within SM_b20881 at 1288.319 kb on + strand, within SM_b20881 at 1288.320 kb on - strand, within SM_b20881 at 1288.392 kb on + strand, within SM_b20881 at 1288.393 kb on - strand, within SM_b20881 at 1288.393 kb on - strand, within SM_b20881 at 1288.589 kb on + strand, within SM_b20882 at 1288.589 kb on + strand, within SM_b20882 at 1288.841 kb on + strand, within SM_b20882 at 1289.015 kb on + strand at 1289.016 kb on - strand at 1289.018 kb on + strand at 1289.019 kb on - strand at 1289.019 kb on - strand at 1289.112 kb on + strand at 1289.113 kb on - strand at 1289.113 kb on - strand at 1289.113 kb on - strand at 1289.116 kb on + strand at 1289.117 kb on - strand at 1289.117 kb on - strand at 1289.261 kb on + strand, within SM_b20883
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 1,287,216 + SM_b20880 0.63 -3.7 1,287,216 + SM_b20880 0.63 -2.0 1,287,217 - SM_b20880 0.63 -2.7 1,287,217 - SM_b20880 0.63 -1.0 1,287,222 + SM_b20880 0.63 -1.4 1,287,223 - SM_b20880 0.64 -1.2 1,287,223 - SM_b20880 0.64 -1.4 1,287,223 - SM_b20880 0.64 -1.1 1,287,249 + SM_b20880 0.65 -2.3 1,287,249 + SM_b20880 0.65 -1.2 1,287,249 + SM_b20880 0.65 -1.1 1,287,250 - SM_b20880 0.65 -2.1 1,287,803 - +1.0 1,287,903 - -1.3 1,287,925 - -0.8 1,287,958 + -0.6 1,287,987 + +1.6 1,287,988 - -1.3 1,288,056 + +0.9 1,288,057 - +0.2 1,288,057 - +0.2 1,288,099 - SM_b20881 0.15 -0.1 1,288,099 - SM_b20881 0.15 -1.3 1,288,211 + SM_b20881 0.39 -1.6 1,288,228 - SM_b20881 0.43 -0.1 1,288,228 - SM_b20881 0.43 +0.0 1,288,249 + SM_b20881 0.47 +0.5 1,288,249 + SM_b20881 0.47 +0.8 1,288,282 - SM_b20881 0.54 +0.7 1,288,319 + SM_b20881 0.62 +1.2 1,288,319 + SM_b20881 0.62 +0.2 1,288,320 - SM_b20881 0.63 -2.8 1,288,392 + SM_b20881 0.78 -0.0 1,288,393 - SM_b20881 0.78 +0.1 1,288,393 - SM_b20881 0.78 +0.1 1,288,589 + SM_b20882 0.11 +2.7 1,288,589 + SM_b20882 0.11 +0.3 1,288,841 + SM_b20882 0.67 +0.1 1,289,015 + -0.9 1,289,016 - +0.9 1,289,018 + -1.1 1,289,019 - +0.6 1,289,019 - -0.7 1,289,112 + -0.4 1,289,113 - -3.0 1,289,113 - -0.1 1,289,113 - -1.4 1,289,116 + +1.1 1,289,117 - -1.4 1,289,117 - -0.8 1,289,261 + SM_b20883 0.19 -0.3
Or see this region's nucleotide sequence