Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20847

Experiment: Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20846 and SM_b21676 are separated by 266 nucleotidesSM_b21676 and SM_b20847 are separated by 12 nucleotidesSM_b20847 and SM_b20848 are separated by 88 nucleotides SM_b20846: SM_b20846 - xanthine dehydrogenase, at 1,246,623 to 1,248,959 _b20846 SM_b21676: SM_b21676 - hypothetical protein, at 1,249,226 to 1,249,519 _b21676 SM_b20847: SM_b20847 - LysR family transcriptional regulator, at 1,249,532 to 1,250,431 _b20847 SM_b20848: SM_b20848 - membrane protein, at 1,250,520 to 1,251,752 _b20848 Position (kb) 1249 1250 1251Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1248.537 kb on + strand, within SM_b20846at 1248.538 kb on - strand, within SM_b20846at 1248.538 kb on - strand, within SM_b20846at 1248.706 kb on - strand, within SM_b20846at 1248.706 kb on - strand, within SM_b20846at 1248.713 kb on - strand, within SM_b20846at 1248.947 kb on + strandat 1248.948 kb on - strandat 1248.948 kb on - strandat 1249.185 kb on - strandat 1249.228 kb on - strandat 1249.322 kb on + strand, within SM_b21676at 1249.337 kb on + strand, within SM_b21676at 1249.337 kb on + strand, within SM_b21676at 1249.405 kb on + strand, within SM_b21676at 1249.406 kb on - strand, within SM_b21676at 1249.408 kb on - strand, within SM_b21676at 1249.408 kb on - strand, within SM_b21676at 1249.408 kb on - strand, within SM_b21676at 1249.478 kb on - strand, within SM_b21676at 1249.510 kb on + strandat 1249.649 kb on + strand, within SM_b20847at 1249.650 kb on - strand, within SM_b20847at 1249.944 kb on + strand, within SM_b20847at 1249.944 kb on + strand, within SM_b20847at 1249.944 kb on + strand, within SM_b20847at 1249.944 kb on + strand, within SM_b20847at 1249.945 kb on - strand, within SM_b20847at 1249.945 kb on - strand, within SM_b20847at 1250.020 kb on - strand, within SM_b20847at 1250.026 kb on + strand, within SM_b20847at 1250.294 kb on + strand, within SM_b20847at 1250.295 kb on - strand, within SM_b20847at 1250.295 kb on - strand, within SM_b20847at 1250.295 kb on - strand, within SM_b20847at 1250.333 kb on + strand, within SM_b20847at 1250.346 kb on - strandat 1250.437 kb on + strandat 1250.438 kb on - strandat 1250.438 kb on - strandat 1250.523 kb on + strandat 1250.524 kb on - strandat 1250.524 kb on - strandat 1250.524 kb on - strandat 1250.563 kb on + strandat 1250.614 kb on - strandat 1250.671 kb on - strand, within SM_b20848at 1250.706 kb on + strand, within SM_b20848at 1250.707 kb on - strand, within SM_b20848at 1250.707 kb on - strand, within SM_b20848at 1250.707 kb on - strand, within SM_b20848at 1250.717 kb on + strand, within SM_b20848at 1250.717 kb on + strand, within SM_b20848at 1250.717 kb on + strand, within SM_b20848at 1250.717 kb on + strand, within SM_b20848at 1250.722 kb on - strand, within SM_b20848at 1250.722 kb on - strand, within SM_b20848at 1250.779 kb on - strand, within SM_b20848at 1250.820 kb on + strand, within SM_b20848at 1250.820 kb on + strand, within SM_b20848at 1250.821 kb on - strand, within SM_b20848at 1250.821 kb on - strand, within SM_b20848at 1250.821 kb on - strand, within SM_b20848at 1250.824 kb on - strand, within SM_b20848at 1250.849 kb on - strand, within SM_b20848at 1250.928 kb on + strand, within SM_b20848at 1250.928 kb on + strand, within SM_b20848at 1250.928 kb on + strand, within SM_b20848at 1250.929 kb on - strand, within SM_b20848at 1250.929 kb on - strand, within SM_b20848at 1250.939 kb on - strand, within SM_b20848at 1250.996 kb on - strand, within SM_b20848at 1250.996 kb on - strand, within SM_b20848at 1251.018 kb on + strand, within SM_b20848at 1251.018 kb on + strand, within SM_b20848at 1251.019 kb on - strand, within SM_b20848at 1251.019 kb on - strand, within SM_b20848at 1251.020 kb on + strand, within SM_b20848at 1251.208 kb on - strand, within SM_b20848at 1251.208 kb on - strand, within SM_b20848at 1251.208 kb on - strand, within SM_b20848at 1251.238 kb on + strand, within SM_b20848

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM
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1,248,537 + SM_b20846 0.82 +1.0
1,248,538 - SM_b20846 0.82 +0.7
1,248,538 - SM_b20846 0.82 +0.7
1,248,706 - SM_b20846 0.89 -0.6
1,248,706 - SM_b20846 0.89 +0.0
1,248,713 - SM_b20846 0.89 -0.9
1,248,947 + +1.4
1,248,948 - -2.1
1,248,948 - +0.2
1,249,185 - -0.1
1,249,228 - +1.0
1,249,322 + SM_b21676 0.33 +3.3
1,249,337 + SM_b21676 0.38 +2.9
1,249,337 + SM_b21676 0.38 +2.6
1,249,405 + SM_b21676 0.61 +1.3
1,249,406 - SM_b21676 0.61 +1.2
1,249,408 - SM_b21676 0.62 +1.8
1,249,408 - SM_b21676 0.62 +1.8
1,249,408 - SM_b21676 0.62 +1.9
1,249,478 - SM_b21676 0.86 +4.1
1,249,510 + +2.6
1,249,649 + SM_b20847 0.13 +2.1
1,249,650 - SM_b20847 0.13 -1.0
1,249,944 + SM_b20847 0.46 +2.5
1,249,944 + SM_b20847 0.46 +2.8
1,249,944 + SM_b20847 0.46 +2.7
1,249,944 + SM_b20847 0.46 +2.0
1,249,945 - SM_b20847 0.46 +2.1
1,249,945 - SM_b20847 0.46 +2.8
1,250,020 - SM_b20847 0.54 +3.6
1,250,026 + SM_b20847 0.55 +2.8
1,250,294 + SM_b20847 0.85 +1.5
1,250,295 - SM_b20847 0.85 +2.3
1,250,295 - SM_b20847 0.85 +2.1
1,250,295 - SM_b20847 0.85 +2.3
1,250,333 + SM_b20847 0.89 +1.3
1,250,346 - -0.3
1,250,437 + -0.2
1,250,438 - -1.8
1,250,438 - -0.9
1,250,523 + +0.7
1,250,524 - +0.3
1,250,524 - +0.8
1,250,524 - -3.0
1,250,563 + -0.3
1,250,614 - -3.0
1,250,671 - SM_b20848 0.12 -0.7
1,250,706 + SM_b20848 0.15 +0.5
1,250,707 - SM_b20848 0.15 -1.1
1,250,707 - SM_b20848 0.15 +0.1
1,250,707 - SM_b20848 0.15 -0.0
1,250,717 + SM_b20848 0.16 -2.6
1,250,717 + SM_b20848 0.16 -2.0
1,250,717 + SM_b20848 0.16 -3.2
1,250,717 + SM_b20848 0.16 +0.0
1,250,722 - SM_b20848 0.16 +0.3
1,250,722 - SM_b20848 0.16 -0.9
1,250,779 - SM_b20848 0.21 -1.0
1,250,820 + SM_b20848 0.24 -0.4
1,250,820 + SM_b20848 0.24 +0.4
1,250,821 - SM_b20848 0.24 +1.5
1,250,821 - SM_b20848 0.24 +1.9
1,250,821 - SM_b20848 0.24 -0.2
1,250,824 - SM_b20848 0.25 +0.4
1,250,849 - SM_b20848 0.27 -0.2
1,250,928 + SM_b20848 0.33 +0.1
1,250,928 + SM_b20848 0.33 +0.0
1,250,928 + SM_b20848 0.33 +0.6
1,250,929 - SM_b20848 0.33 +1.4
1,250,929 - SM_b20848 0.33 -0.2
1,250,939 - SM_b20848 0.34 -1.2
1,250,996 - SM_b20848 0.39 +0.3
1,250,996 - SM_b20848 0.39 -0.2
1,251,018 + SM_b20848 0.40 -0.8
1,251,018 + SM_b20848 0.40 +0.3
1,251,019 - SM_b20848 0.40 -1.2
1,251,019 - SM_b20848 0.40 +0.8
1,251,020 + SM_b20848 0.41 +0.3
1,251,208 - SM_b20848 0.56 -1.7
1,251,208 - SM_b20848 0.56 +0.9
1,251,208 - SM_b20848 0.56 +1.0
1,251,238 + SM_b20848 0.58 -0.0

Or see this region's nucleotide sequence