Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20757 and SM_b20758 are separated by 11 nucleotides SM_b20758 and SM_b20759 are separated by 122 nucleotides SM_b20759 and SM_b20760 overlap by 1 nucleotides
SM_b20757: SM_b20757 - methylmalonyl-CoA mutase, at 1,548,979 to 1,551,117
_b20757
SM_b20758: SM_b20758 - ArsR family transcriptional regulator, at 1,551,129 to 1,551,863
_b20758
SM_b20759: SM_b20759 - carbon-phosphorus lyase, at 1,551,986 to 1,552,456
_b20759
SM_b20760: SM_b20760 - carbon-phosphorus lyase, at 1,552,456 to 1,553,058
_b20760
Position (kb)
1551
1552 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1550.162 kb on - strand, within SM_b20757 at 1550.162 kb on - strand, within SM_b20757 at 1550.164 kb on + strand, within SM_b20757 at 1550.351 kb on - strand, within SM_b20757 at 1550.351 kb on - strand, within SM_b20757 at 1550.632 kb on - strand, within SM_b20757 at 1550.635 kb on + strand, within SM_b20757 at 1550.636 kb on - strand, within SM_b20757 at 1550.647 kb on + strand, within SM_b20757 at 1551.004 kb on + strand at 1551.004 kb on + strand at 1551.005 kb on - strand at 1551.011 kb on - strand at 1551.201 kb on + strand at 1551.371 kb on - strand, within SM_b20758 at 1551.409 kb on + strand, within SM_b20758 at 1551.409 kb on + strand, within SM_b20758 at 1551.410 kb on - strand, within SM_b20758 at 1551.773 kb on - strand, within SM_b20758 at 1551.823 kb on - strand at 1551.944 kb on - strand at 1552.478 kb on - strand at 1552.479 kb on + strand at 1552.661 kb on + strand, within SM_b20760 at 1552.817 kb on - strand, within SM_b20760
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 1,550,162 - SM_b20757 0.55 +1.0 1,550,162 - SM_b20757 0.55 +0.9 1,550,164 + SM_b20757 0.55 +0.4 1,550,351 - SM_b20757 0.64 +1.2 1,550,351 - SM_b20757 0.64 +0.7 1,550,632 - SM_b20757 0.77 +0.2 1,550,635 + SM_b20757 0.77 +1.5 1,550,636 - SM_b20757 0.77 +1.0 1,550,647 + SM_b20757 0.78 -1.2 1,551,004 + -0.5 1,551,004 + -0.3 1,551,005 - -0.2 1,551,011 - -0.2 1,551,201 + -3.5 1,551,371 - SM_b20758 0.33 -2.8 1,551,409 + SM_b20758 0.38 -0.3 1,551,409 + SM_b20758 0.38 -1.7 1,551,410 - SM_b20758 0.38 -1.4 1,551,773 - SM_b20758 0.88 -0.3 1,551,823 - -2.8 1,551,944 - +0.3 1,552,478 - +0.2 1,552,479 + -0.0 1,552,661 + SM_b20760 0.34 -0.9 1,552,817 - SM_b20760 0.60 -0.0
Or see this region's nucleotide sequence