Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20661

Experiment: Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20660 and SM_b20661 are separated by 134 nucleotidesSM_b20661 and SM_b20662 are separated by 84 nucleotidesSM_b20662 and SM_b20663 are separated by 1 nucleotides SM_b20660: SM_b20660 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,460,932 to 1,462,236 _b20660 SM_b20661: SM_b20661 - sugar uptake ABC transporter ATP-binding protein, at 1,462,371 to 1,463,438 _b20661 SM_b20662: SM_b20662 - oxidoreductase, at 1,463,523 to 1,464,299 _b20662 SM_b20663: SM_b20663 - hypothetical protein, at 1,464,301 to 1,465,284 _b20663 Position (kb) 1462 1463 1464Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1461.402 kb on - strand, within SM_b20660at 1461.402 kb on - strand, within SM_b20660at 1461.404 kb on + strand, within SM_b20660at 1461.405 kb on - strand, within SM_b20660at 1461.405 kb on - strand, within SM_b20660at 1461.434 kb on - strand, within SM_b20660at 1461.506 kb on + strand, within SM_b20660at 1461.506 kb on + strand, within SM_b20660at 1461.507 kb on - strand, within SM_b20660at 1461.507 kb on - strand, within SM_b20660at 1461.521 kb on + strand, within SM_b20660at 1461.617 kb on + strandat 1461.617 kb on + strand, within SM_b20660at 1461.618 kb on - strand, within SM_b20660at 1461.824 kb on + strand, within SM_b20660at 1461.824 kb on + strand, within SM_b20660at 1461.825 kb on - strand, within SM_b20660at 1461.825 kb on - strand, within SM_b20660at 1461.825 kb on - strand, within SM_b20660at 1461.842 kb on + strand, within SM_b20660at 1461.843 kb on - strand, within SM_b20660at 1461.843 kb on - strand, within SM_b20660at 1461.855 kb on - strand, within SM_b20660at 1461.855 kb on - strand, within SM_b20660at 1461.942 kb on + strand, within SM_b20660at 1462.053 kb on + strand, within SM_b20660at 1462.136 kb on + strandat 1462.136 kb on + strandat 1462.137 kb on - strandat 1462.239 kb on + strandat 1462.240 kb on - strandat 1462.240 kb on - strandat 1462.240 kb on - strandat 1462.588 kb on + strand, within SM_b20661at 1462.588 kb on + strand, within SM_b20661at 1462.588 kb on + strand, within SM_b20661at 1462.588 kb on + strand, within SM_b20661at 1462.607 kb on - strand, within SM_b20661at 1462.737 kb on + strand, within SM_b20661at 1462.874 kb on - strand, within SM_b20661at 1463.171 kb on + strand, within SM_b20661at 1463.179 kb on + strand, within SM_b20661at 1463.606 kb on - strand, within SM_b20662at 1463.606 kb on - strand, within SM_b20662at 1463.606 kb on - strand, within SM_b20662at 1463.606 kb on - strand, within SM_b20662at 1463.813 kb on - strand, within SM_b20662at 1463.813 kb on - strand, within SM_b20662at 1463.813 kb on - strand, within SM_b20662at 1464.196 kb on + strand, within SM_b20662at 1464.197 kb on - strand, within SM_b20662

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM
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1,461,402 - SM_b20660 0.36 -0.8
1,461,402 - SM_b20660 0.36 -0.8
1,461,404 + SM_b20660 0.36 -0.5
1,461,405 - SM_b20660 0.36 +0.5
1,461,405 - SM_b20660 0.36 -1.7
1,461,434 - SM_b20660 0.38 +1.6
1,461,506 + SM_b20660 0.44 +0.2
1,461,506 + SM_b20660 0.44 -1.5
1,461,507 - SM_b20660 0.44 -0.1
1,461,507 - SM_b20660 0.44 -1.1
1,461,521 + SM_b20660 0.45 -1.8
1,461,617 + +2.4
1,461,617 + SM_b20660 0.52 +1.2
1,461,618 - SM_b20660 0.53 -1.0
1,461,824 + SM_b20660 0.68 +0.2
1,461,824 + SM_b20660 0.68 -0.4
1,461,825 - SM_b20660 0.68 +0.4
1,461,825 - SM_b20660 0.68 -0.4
1,461,825 - SM_b20660 0.68 -0.2
1,461,842 + SM_b20660 0.70 -1.4
1,461,843 - SM_b20660 0.70 -0.5
1,461,843 - SM_b20660 0.70 -0.8
1,461,855 - SM_b20660 0.71 +0.3
1,461,855 - SM_b20660 0.71 -2.6
1,461,942 + SM_b20660 0.77 +0.8
1,462,053 + SM_b20660 0.86 -1.5
1,462,136 + +1.6
1,462,136 + -0.4
1,462,137 - +0.2
1,462,239 + -0.9
1,462,240 - -0.6
1,462,240 - +1.0
1,462,240 - -2.0
1,462,588 + SM_b20661 0.20 +0.5
1,462,588 + SM_b20661 0.20 -1.0
1,462,588 + SM_b20661 0.20 -3.2
1,462,588 + SM_b20661 0.20 +0.5
1,462,607 - SM_b20661 0.22 +1.0
1,462,737 + SM_b20661 0.34 +0.2
1,462,874 - SM_b20661 0.47 -1.0
1,463,171 + SM_b20661 0.75 -1.6
1,463,179 + SM_b20661 0.76 +0.1
1,463,606 - SM_b20662 0.11 -0.4
1,463,606 - SM_b20662 0.11 -0.2
1,463,606 - SM_b20662 0.11 +0.6
1,463,606 - SM_b20662 0.11 +1.7
1,463,813 - SM_b20662 0.37 -1.1
1,463,813 - SM_b20662 0.37 -1.5
1,463,813 - SM_b20662 0.37 -0.0
1,464,196 + SM_b20662 0.87 +0.0
1,464,197 - SM_b20662 0.87 -0.6

Or see this region's nucleotide sequence