Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20562

Experiment: Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20561 and SM_b20562 are separated by 130 nucleotidesSM_b20562 and SM_b20563 are separated by 114 nucleotides SM_b20561: SM_b20561 - hypothetical protein, at 585,597 to 586,055 _b20561 SM_b20562: SM_b20562 - hypothetical protein, at 586,186 to 587,100 _b20562 SM_b20563: SM_b20563 - hypothetical protein, at 587,215 to 588,129 _b20563 Position (kb) 586 587 588Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 585.203 kb on - strandat 585.203 kb on - strandat 585.387 kb on + strandat 585.387 kb on + strandat 585.497 kb on - strandat 585.557 kb on - strandat 585.557 kb on - strandat 585.557 kb on - strandat 585.599 kb on - strandat 585.685 kb on + strand, within SM_b20561at 585.685 kb on + strand, within SM_b20561at 585.685 kb on + strand, within SM_b20561at 585.685 kb on + strand, within SM_b20561at 585.686 kb on - strand, within SM_b20561at 585.686 kb on - strand, within SM_b20561at 585.686 kb on - strand, within SM_b20561at 585.686 kb on - strand, within SM_b20561at 585.686 kb on - strand, within SM_b20561at 585.686 kb on - strand, within SM_b20561at 585.686 kb on - strand, within SM_b20561at 585.823 kb on - strand, within SM_b20561at 585.930 kb on + strand, within SM_b20561at 585.930 kb on + strand, within SM_b20561at 586.006 kb on + strand, within SM_b20561at 586.006 kb on + strand, within SM_b20561at 586.007 kb on - strand, within SM_b20561at 586.007 kb on - strand, within SM_b20561at 586.057 kb on + strandat 586.058 kb on - strandat 586.058 kb on - strandat 586.102 kb on + strandat 586.107 kb on + strandat 586.107 kb on + strandat 586.108 kb on - strandat 586.119 kb on + strandat 586.119 kb on + strandat 586.120 kb on - strandat 586.120 kb on - strandat 586.122 kb on - strandat 586.179 kb on + strandat 586.179 kb on + strandat 586.179 kb on + strandat 586.188 kb on - strandat 586.250 kb on + strandat 586.251 kb on - strandat 586.256 kb on + strandat 586.256 kb on + strandat 586.257 kb on - strandat 586.257 kb on - strandat 586.372 kb on - strand, within SM_b20562at 586.372 kb on - strand, within SM_b20562at 586.457 kb on + strand, within SM_b20562at 586.457 kb on + strand, within SM_b20562at 586.457 kb on + strand, within SM_b20562at 586.458 kb on - strand, within SM_b20562at 586.458 kb on - strand, within SM_b20562at 586.612 kb on + strand, within SM_b20562at 586.612 kb on + strand, within SM_b20562at 586.612 kb on + strand, within SM_b20562at 586.613 kb on - strand, within SM_b20562at 586.613 kb on - strand, within SM_b20562at 586.613 kb on - strand, within SM_b20562at 586.613 kb on - strand, within SM_b20562at 586.637 kb on + strand, within SM_b20562at 586.638 kb on - strand, within SM_b20562at 586.643 kb on + strand, within SM_b20562at 586.644 kb on - strand, within SM_b20562at 586.722 kb on + strand, within SM_b20562at 586.759 kb on + strand, within SM_b20562at 586.778 kb on + strand, within SM_b20562at 586.779 kb on - strand, within SM_b20562at 586.838 kb on + strand, within SM_b20562at 586.838 kb on + strand, within SM_b20562at 586.838 kb on + strand, within SM_b20562at 586.839 kb on - strand, within SM_b20562at 586.839 kb on - strand, within SM_b20562at 586.881 kb on + strand, within SM_b20562at 586.882 kb on - strand, within SM_b20562at 586.889 kb on + strand, within SM_b20562at 586.942 kb on + strand, within SM_b20562at 586.943 kb on - strand, within SM_b20562at 587.073 kb on + strandat 587.074 kb on - strandat 587.213 kb on + strandat 587.213 kb on + strandat 587.668 kb on - strand, within SM_b20563at 587.668 kb on - strand, within SM_b20563at 587.784 kb on - strand, within SM_b20563at 588.011 kb on + strand, within SM_b20563at 588.100 kb on - strandat 588.100 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM
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585,203 - +0.2
585,203 - +0.8
585,387 + +0.7
585,387 + +1.5
585,497 - +1.4
585,557 - -1.5
585,557 - -0.7
585,557 - -0.8
585,599 - +0.4
585,685 + SM_b20561 0.19 +0.2
585,685 + SM_b20561 0.19 +0.6
585,685 + SM_b20561 0.19 -0.1
585,685 + SM_b20561 0.19 -0.7
585,686 - SM_b20561 0.19 -0.2
585,686 - SM_b20561 0.19 -2.0
585,686 - SM_b20561 0.19 -0.4
585,686 - SM_b20561 0.19 +0.3
585,686 - SM_b20561 0.19 -0.3
585,686 - SM_b20561 0.19 +0.1
585,686 - SM_b20561 0.19 +1.0
585,823 - SM_b20561 0.49 +0.2
585,930 + SM_b20561 0.73 -0.1
585,930 + SM_b20561 0.73 -3.1
586,006 + SM_b20561 0.89 -1.6
586,006 + SM_b20561 0.89 +0.3
586,007 - SM_b20561 0.89 +1.0
586,007 - SM_b20561 0.89 -0.2
586,057 + -0.5
586,058 - +0.5
586,058 - +1.0
586,102 + -2.8
586,107 + +1.5
586,107 + +0.6
586,108 - +0.1
586,119 + +0.3
586,119 + -0.2
586,120 - +0.4
586,120 - +1.0
586,122 - +1.8
586,179 + +0.6
586,179 + -3.1
586,179 + -0.7
586,188 - +0.4
586,250 + +1.7
586,251 - +0.7
586,256 + -2.2
586,256 + +0.4
586,257 - +2.1
586,257 - +1.2
586,372 - SM_b20562 0.20 +1.6
586,372 - SM_b20562 0.20 -1.3
586,457 + SM_b20562 0.30 +3.2
586,457 + SM_b20562 0.30 +2.0
586,457 + SM_b20562 0.30 -1.7
586,458 - SM_b20562 0.30 +0.4
586,458 - SM_b20562 0.30 -1.0
586,612 + SM_b20562 0.47 +1.1
586,612 + SM_b20562 0.47 +0.7
586,612 + SM_b20562 0.47 +0.7
586,613 - SM_b20562 0.47 +1.9
586,613 - SM_b20562 0.47 +1.0
586,613 - SM_b20562 0.47 +0.2
586,613 - SM_b20562 0.47 +2.0
586,637 + SM_b20562 0.49 +0.9
586,638 - SM_b20562 0.49 +0.4
586,643 + SM_b20562 0.50 -0.3
586,644 - SM_b20562 0.50 +0.4
586,722 + SM_b20562 0.59 +0.6
586,759 + SM_b20562 0.63 +0.7
586,778 + SM_b20562 0.65 -0.4
586,779 - SM_b20562 0.65 +1.3
586,838 + SM_b20562 0.71 +4.7
586,838 + SM_b20562 0.71 +1.1
586,838 + SM_b20562 0.71 -1.8
586,839 - SM_b20562 0.71 +0.7
586,839 - SM_b20562 0.71 +1.6
586,881 + SM_b20562 0.76 +1.4
586,882 - SM_b20562 0.76 +0.4
586,889 + SM_b20562 0.77 +1.0
586,942 + SM_b20562 0.83 +0.1
586,943 - SM_b20562 0.83 -0.3
587,073 + +0.4
587,074 - +0.6
587,213 + -0.2
587,213 + +1.2
587,668 - SM_b20563 0.50 -1.5
587,668 - SM_b20563 0.50 +2.5
587,784 - SM_b20563 0.62 -0.2
588,011 + SM_b20563 0.87 -1.1
588,100 - -2.0
588,100 - -0.2

Or see this region's nucleotide sequence