Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20543 and SM_b20545 are separated by 592 nucleotides SM_b20545 and SM_b20546 are separated by 186 nucleotides SM_b20546 and SM_b20547 are separated by 156 nucleotides
SM_b20543: SM_b20543 - protein in ISRm14, at 570,402 to 570,845
_b20543
SM_b20545: SM_b20545 - hypothetical protein, at 571,438 to 571,656
_b20545
SM_b20546: SM_b20546 - hypothetical protein, at 571,843 to 572,361
_b20546
SM_b20547: SM_b20547 - hypothetical protein, at 572,518 to 572,796
_b20547
Position (kb) 571
572
573 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 570.900 kb on + strand at 570.968 kb on + strand at 570.968 kb on + strand at 570.968 kb on + strand at 570.969 kb on - strand at 570.975 kb on + strand at 570.975 kb on + strand at 570.976 kb on - strand at 570.976 kb on - strand at 570.976 kb on - strand at 570.991 kb on + strand at 570.992 kb on - strand at 570.992 kb on - strand at 570.993 kb on + strand at 570.993 kb on + strand at 570.994 kb on - strand at 570.994 kb on - strand at 570.994 kb on - strand at 571.020 kb on + strand at 571.020 kb on + strand at 571.021 kb on - strand at 571.026 kb on - strand at 571.047 kb on + strand at 571.048 kb on - strand at 571.149 kb on - strand at 571.194 kb on - strand at 571.194 kb on - strand at 571.194 kb on - strand at 571.197 kb on + strand at 571.198 kb on - strand at 571.198 kb on - strand at 571.198 kb on - strand at 571.245 kb on - strand at 571.251 kb on + strand at 571.307 kb on + strand at 571.307 kb on + strand at 571.307 kb on + strand at 571.307 kb on + strand at 571.308 kb on - strand at 571.349 kb on + strand at 571.355 kb on + strand at 571.441 kb on + strand at 571.670 kb on + strand at 571.739 kb on + strand at 571.845 kb on - strand at 571.845 kb on - strand at 571.845 kb on - strand at 571.939 kb on + strand, within SM_b20546 at 571.939 kb on + strand, within SM_b20546 at 571.940 kb on - strand, within SM_b20546 at 571.940 kb on - strand, within SM_b20546 at 571.940 kb on - strand, within SM_b20546 at 572.063 kb on + strand, within SM_b20546 at 572.063 kb on + strand, within SM_b20546 at 572.063 kb on + strand, within SM_b20546 at 572.064 kb on - strand, within SM_b20546 at 572.064 kb on - strand, within SM_b20546 at 572.093 kb on - strand, within SM_b20546 at 572.093 kb on - strand, within SM_b20546 at 572.247 kb on + strand, within SM_b20546 at 572.282 kb on + strand, within SM_b20546 at 572.335 kb on + strand at 572.336 kb on - strand at 572.369 kb on + strand at 572.369 kb on + strand at 572.370 kb on - strand at 572.425 kb on - strand at 572.473 kb on - strand at 572.532 kb on + strand at 572.532 kb on + strand at 572.562 kb on + strand, within SM_b20547 at 572.562 kb on + strand, within SM_b20547 at 572.654 kb on - strand, within SM_b20547 at 572.792 kb on + strand at 572.792 kb on + strand at 572.793 kb on - strand at 572.793 kb on - strand at 572.829 kb on + strand at 572.829 kb on + strand at 573.044 kb on + strand at 573.182 kb on + strand at 573.183 kb on - strand at 573.211 kb on - strand at 573.260 kb on - strand at 573.345 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 570,900 + -2.4 570,968 + +0.2 570,968 + +2.4 570,968 + -1.6 570,969 - +0.0 570,975 + -0.4 570,975 + -0.6 570,976 - -1.1 570,976 - +0.5 570,976 - -0.2 570,991 + +0.9 570,992 - +2.1 570,992 - +0.6 570,993 + +1.0 570,993 + -0.9 570,994 - -0.2 570,994 - -1.3 570,994 - +0.4 571,020 + +1.2 571,020 + +0.2 571,021 - -1.3 571,026 - +0.2 571,047 + +0.5 571,048 - +0.4 571,149 - +0.0 571,194 - -3.1 571,194 - -0.6 571,194 - -1.9 571,197 + +0.0 571,198 - +0.2 571,198 - +0.7 571,198 - -0.4 571,245 - -1.0 571,251 + -0.7 571,307 + -0.4 571,307 + +0.7 571,307 + +0.0 571,307 + -0.3 571,308 - +2.1 571,349 + +0.1 571,355 + -0.0 571,441 + +0.0 571,670 + -0.7 571,739 + -0.9 571,845 - -1.2 571,845 - -2.0 571,845 - -2.5 571,939 + SM_b20546 0.18 +0.6 571,939 + SM_b20546 0.18 +0.1 571,940 - SM_b20546 0.19 -1.6 571,940 - SM_b20546 0.19 -0.8 571,940 - SM_b20546 0.19 -0.4 572,063 + SM_b20546 0.42 -0.4 572,063 + SM_b20546 0.42 -0.6 572,063 + SM_b20546 0.42 -0.3 572,064 - SM_b20546 0.43 -0.3 572,064 - SM_b20546 0.43 -0.6 572,093 - SM_b20546 0.48 -0.5 572,093 - SM_b20546 0.48 +0.6 572,247 + SM_b20546 0.78 -2.2 572,282 + SM_b20546 0.85 +0.3 572,335 + +1.4 572,336 - -1.0 572,369 + +0.2 572,369 + +0.2 572,370 - -0.3 572,425 - -1.7 572,473 - -1.4 572,532 + +0.5 572,532 + -0.8 572,562 + SM_b20547 0.16 -2.4 572,562 + SM_b20547 0.16 +0.3 572,654 - SM_b20547 0.49 +0.0 572,792 + -0.0 572,792 + +2.0 572,793 - -0.8 572,793 - +0.0 572,829 + -2.3 572,829 + +1.4 573,044 + +0.6 573,182 + -0.5 573,183 - +0.1 573,211 - -1.7 573,260 - +0.0 573,345 - -0.5
Or see this region's nucleotide sequence