Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20482 and SM_b20483 are separated by 7 nucleotides SM_b20483 and SM_b20484 are separated by 273 nucleotides
SM_b20482: SM_b20482 - hypothetical protein, at 496,696 to 498,483
_b20482
SM_b20483: SM_b20483 - catabolite repressor protein, at 498,491 to 499,561
_b20483
SM_b20484: SM_b20484 - sugar ABC transporter substrate-binding protein, at 499,835 to 500,827
_b20484
Position (kb) 498
499
500 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 497.542 kb on + strand, within SM_b20482 at 497.543 kb on - strand, within SM_b20482 at 497.820 kb on - strand, within SM_b20482 at 498.003 kb on + strand, within SM_b20482 at 498.003 kb on + strand, within SM_b20482 at 498.003 kb on + strand, within SM_b20482 at 498.003 kb on + strand, within SM_b20482 at 498.004 kb on - strand, within SM_b20482 at 498.004 kb on - strand, within SM_b20482 at 498.004 kb on - strand, within SM_b20482 at 498.188 kb on + strand, within SM_b20482 at 498.446 kb on + strand at 498.446 kb on + strand at 498.447 kb on - strand at 498.482 kb on - strand at 498.581 kb on + strand at 498.696 kb on + strand, within SM_b20483 at 498.696 kb on + strand, within SM_b20483 at 498.696 kb on + strand, within SM_b20483 at 498.697 kb on - strand, within SM_b20483 at 498.826 kb on - strand, within SM_b20483 at 498.878 kb on + strand, within SM_b20483 at 498.878 kb on + strand, within SM_b20483 at 498.879 kb on - strand, within SM_b20483 at 498.936 kb on - strand, within SM_b20483 at 498.936 kb on - strand, within SM_b20483 at 498.978 kb on + strand, within SM_b20483 at 499.108 kb on + strand, within SM_b20483 at 499.109 kb on - strand at 499.109 kb on - strand, within SM_b20483 at 499.115 kb on + strand, within SM_b20483 at 499.115 kb on + strand, within SM_b20483 at 499.116 kb on - strand, within SM_b20483 at 499.172 kb on - strand, within SM_b20483 at 499.191 kb on + strand, within SM_b20483 at 499.192 kb on - strand, within SM_b20483 at 499.274 kb on - strand, within SM_b20483 at 499.274 kb on - strand, within SM_b20483 at 499.328 kb on + strand, within SM_b20483 at 499.370 kb on + strand, within SM_b20483 at 499.399 kb on - strand, within SM_b20483 at 499.476 kb on - strand at 499.527 kb on + strand at 499.527 kb on + strand at 499.528 kb on - strand at 499.528 kb on - strand at 499.643 kb on + strand at 499.892 kb on + strand at 499.892 kb on + strand at 499.950 kb on + strand, within SM_b20484 at 500.106 kb on + strand, within SM_b20484 at 500.291 kb on + strand, within SM_b20484 at 500.292 kb on - strand, within SM_b20484 at 500.357 kb on + strand, within SM_b20484 at 500.358 kb on - strand, within SM_b20484
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 497,542 + SM_b20482 0.47 +0.1 497,543 - SM_b20482 0.47 -2.1 497,820 - SM_b20482 0.63 +1.2 498,003 + SM_b20482 0.73 +0.0 498,003 + SM_b20482 0.73 -0.9 498,003 + SM_b20482 0.73 +0.2 498,003 + SM_b20482 0.73 -0.1 498,004 - SM_b20482 0.73 -0.0 498,004 - SM_b20482 0.73 -1.6 498,004 - SM_b20482 0.73 +0.3 498,188 + SM_b20482 0.83 -0.8 498,446 + -0.2 498,446 + -0.5 498,447 - +0.7 498,482 - -1.1 498,581 + +3.0 498,696 + SM_b20483 0.19 +0.6 498,696 + SM_b20483 0.19 -1.4 498,696 + SM_b20483 0.19 +0.8 498,697 - SM_b20483 0.19 +1.0 498,826 - SM_b20483 0.31 +0.8 498,878 + SM_b20483 0.36 -0.3 498,878 + SM_b20483 0.36 -0.5 498,879 - SM_b20483 0.36 -2.6 498,936 - SM_b20483 0.42 +0.0 498,936 - SM_b20483 0.42 +0.3 498,978 + SM_b20483 0.45 -0.6 499,108 + SM_b20483 0.58 +0.9 499,109 - +0.4 499,109 - SM_b20483 0.58 +2.8 499,115 + SM_b20483 0.58 +2.5 499,115 + SM_b20483 0.58 -0.1 499,116 - SM_b20483 0.58 -0.4 499,172 - SM_b20483 0.64 -2.8 499,191 + SM_b20483 0.65 +0.3 499,192 - SM_b20483 0.65 +0.3 499,274 - SM_b20483 0.73 -0.4 499,274 - SM_b20483 0.73 -0.6 499,328 + SM_b20483 0.78 -0.8 499,370 + SM_b20483 0.82 -0.4 499,399 - SM_b20483 0.85 +1.6 499,476 - -0.5 499,527 + +0.0 499,527 + -3.2 499,528 - +0.8 499,528 - -0.7 499,643 + -0.1 499,892 + -0.7 499,892 + -0.4 499,950 + SM_b20484 0.12 -0.7 500,106 + SM_b20484 0.27 -1.4 500,291 + SM_b20484 0.46 +0.7 500,292 - SM_b20484 0.46 +0.2 500,357 + SM_b20484 0.53 +0.1 500,358 - SM_b20484 0.53 +0.4
Or see this region's nucleotide sequence