Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20473 and SM_b20474 are separated by 556 nucleotides SM_b20474 and SM_b20475 overlap by 14 nucleotides SM_b20475 and SM_b20476 are separated by 339 nucleotides
SM_b20473: SM_b20473 - hypothetical protein, at 486,727 to 487,224
_b20473
SM_b20474: SM_b20474 - hypothetical protein, at 487,781 to 488,002
_b20474
SM_b20475: SM_b20475 - hypothetical protein, at 487,989 to 488,483
_b20475
SM_b20476: SM_b20476 - peptide ABC transporter substrate-binding protein, at 488,823 to 490,388
_b20476
Position (kb) 487
488
489 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 487.032 kb on - strand, within SM_b20473 at 487.032 kb on - strand, within SM_b20473 at 487.032 kb on - strand, within SM_b20473 at 487.032 kb on - strand, within SM_b20473 at 487.104 kb on + strand, within SM_b20473 at 487.104 kb on + strand, within SM_b20473 at 487.105 kb on - strand, within SM_b20473 at 487.181 kb on + strand at 487.181 kb on + strand at 487.261 kb on + strand at 487.262 kb on - strand at 487.262 kb on - strand at 487.262 kb on - strand at 487.262 kb on - strand at 487.268 kb on - strand at 487.270 kb on + strand at 487.270 kb on + strand at 487.271 kb on - strand at 487.271 kb on - strand at 487.271 kb on - strand at 487.350 kb on + strand at 487.351 kb on - strand at 487.361 kb on + strand at 487.362 kb on - strand at 487.376 kb on - strand at 487.387 kb on + strand at 487.388 kb on - strand at 487.388 kb on - strand at 487.388 kb on - strand at 487.388 kb on - strand at 487.388 kb on - strand at 487.389 kb on + strand at 487.389 kb on + strand at 487.390 kb on - strand at 487.390 kb on - strand at 487.391 kb on + strand at 487.392 kb on - strand at 487.392 kb on - strand at 487.635 kb on + strand at 487.653 kb on + strand at 487.654 kb on - strand at 487.654 kb on - strand at 487.774 kb on + strand at 487.775 kb on - strand at 487.870 kb on + strand, within SM_b20474 at 487.944 kb on + strand, within SM_b20474 at 488.040 kb on + strand, within SM_b20475 at 488.040 kb on + strand, within SM_b20475 at 488.041 kb on - strand, within SM_b20475 at 488.119 kb on - strand, within SM_b20475 at 488.156 kb on + strand, within SM_b20475 at 488.216 kb on - strand, within SM_b20475 at 488.423 kb on - strand, within SM_b20475 at 488.423 kb on - strand, within SM_b20475 at 488.455 kb on + strand at 488.460 kb on + strand at 488.461 kb on - strand at 488.477 kb on + strand at 488.477 kb on + strand at 488.478 kb on - strand at 488.535 kb on + strand at 488.535 kb on + strand at 488.535 kb on + strand at 489.006 kb on + strand, within SM_b20476 at 489.006 kb on + strand, within SM_b20476 at 489.006 kb on + strand, within SM_b20476 at 489.006 kb on + strand, within SM_b20476 at 489.007 kb on - strand, within SM_b20476 at 489.007 kb on - strand, within SM_b20476 at 489.007 kb on - strand, within SM_b20476 at 489.096 kb on + strand, within SM_b20476 at 489.097 kb on - strand, within SM_b20476 at 489.098 kb on + strand, within SM_b20476 at 489.110 kb on - strand, within SM_b20476 at 489.276 kb on - strand, within SM_b20476 at 489.276 kb on - strand, within SM_b20476 at 489.276 kb on - strand, within SM_b20476
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 487,032 - SM_b20473 0.61 -0.2 487,032 - SM_b20473 0.61 -1.6 487,032 - SM_b20473 0.61 +0.0 487,032 - SM_b20473 0.61 -0.4 487,104 + SM_b20473 0.76 +0.3 487,104 + SM_b20473 0.76 -0.1 487,105 - SM_b20473 0.76 -1.4 487,181 + -0.1 487,181 + -0.2 487,261 + -0.2 487,262 - -0.1 487,262 - +0.8 487,262 - -0.8 487,262 - +0.8 487,268 - -0.3 487,270 + +0.3 487,270 + -1.1 487,271 - -0.3 487,271 - -0.1 487,271 - -1.5 487,350 + +0.8 487,351 - +0.7 487,361 + -2.1 487,362 - -0.3 487,376 - +0.9 487,387 + -0.2 487,388 - +0.5 487,388 - -0.2 487,388 - +0.2 487,388 - +0.5 487,388 - -0.3 487,389 + +0.7 487,389 + +0.5 487,390 - +1.4 487,390 - +0.7 487,391 + -0.8 487,392 - -1.4 487,392 - -0.3 487,635 + -0.5 487,653 + +0.0 487,654 - -0.2 487,654 - -0.4 487,774 + +1.1 487,775 - -1.8 487,870 + SM_b20474 0.40 -0.8 487,944 + SM_b20474 0.73 -0.1 488,040 + SM_b20475 0.10 +0.2 488,040 + SM_b20475 0.10 +0.4 488,041 - SM_b20475 0.11 -0.8 488,119 - SM_b20475 0.26 -3.3 488,156 + SM_b20475 0.34 -1.0 488,216 - SM_b20475 0.46 -0.4 488,423 - SM_b20475 0.88 -1.3 488,423 - SM_b20475 0.88 -0.2 488,455 + +0.7 488,460 + +0.6 488,461 - -1.0 488,477 + -0.0 488,477 + -0.8 488,478 - -1.9 488,535 + +0.8 488,535 + -1.3 488,535 + -0.1 489,006 + SM_b20476 0.12 -0.5 489,006 + SM_b20476 0.12 +0.2 489,006 + SM_b20476 0.12 -1.0 489,006 + SM_b20476 0.12 -0.9 489,007 - SM_b20476 0.12 -0.6 489,007 - SM_b20476 0.12 +0.1 489,007 - SM_b20476 0.12 +1.1 489,096 + SM_b20476 0.17 -0.2 489,097 - SM_b20476 0.17 -2.1 489,098 + SM_b20476 0.18 +0.0 489,110 - SM_b20476 0.18 -1.0 489,276 - SM_b20476 0.29 +2.4 489,276 - SM_b20476 0.29 -1.0 489,276 - SM_b20476 0.29 -1.0
Or see this region's nucleotide sequence