Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20417 and SM_b20418 are separated by 8 nucleotides SM_b20418 and SM_b20419 overlap by 1 nucleotides SM_b20419 and SM_b20420 are separated by 121 nucleotides SM_b20420 and SM_b20421 are separated by 152 nucleotides
SM_b20417: SM_b20417 - glycerol-3-phosphate ABC transporter permease, at 431,083 to 431,964
_b20417
SM_b20418: SM_b20418 - glycerol-3-phosphate ABC transporter permease, at 431,973 to 432,821
_b20418
SM_b20419: SM_b20419 - glycerol-3-phosphate ABC transporter ATP-binding protein, at 432,821 to 433,870
_b20419
SM_b20420: SM_b20420 - glutathione S-transferase, at 433,992 to 434,618
_b20420
SM_b20421: SM_b20421 - transposase, at 434,771 to 435,847
_b20421
Position (kb) 432
433
434 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 431.828 kb on - strand, within SM_b20417 at 431.828 kb on - strand, within SM_b20417 at 431.836 kb on + strand, within SM_b20417 at 431.836 kb on + strand, within SM_b20417 at 431.836 kb on + strand, within SM_b20417 at 431.837 kb on - strand, within SM_b20417 at 431.837 kb on - strand, within SM_b20417 at 431.838 kb on + strand, within SM_b20417 at 431.838 kb on + strand, within SM_b20417 at 431.957 kb on - strand at 432.001 kb on + strand at 432.054 kb on + strand at 432.054 kb on + strand at 432.054 kb on + strand at 432.054 kb on + strand at 432.055 kb on - strand at 432.055 kb on - strand at 432.057 kb on + strand at 432.057 kb on + strand at 432.058 kb on - strand, within SM_b20418 at 432.060 kb on - strand, within SM_b20418 at 432.108 kb on - strand, within SM_b20418 at 432.145 kb on - strand, within SM_b20418 at 432.373 kb on - strand, within SM_b20418 at 432.373 kb on - strand, within SM_b20418 at 432.409 kb on - strand, within SM_b20418 at 432.409 kb on - strand, within SM_b20418 at 432.409 kb on - strand, within SM_b20418 at 432.572 kb on + strand, within SM_b20418 at 432.603 kb on + strand, within SM_b20418 at 432.604 kb on - strand, within SM_b20418 at 432.618 kb on + strand, within SM_b20418 at 432.619 kb on - strand, within SM_b20418 at 432.720 kb on + strand, within SM_b20418 at 432.720 kb on + strand, within SM_b20418 at 432.720 kb on + strand, within SM_b20418 at 432.721 kb on - strand, within SM_b20418 at 432.721 kb on - strand, within SM_b20418 at 432.819 kb on + strand at 432.820 kb on - strand at 432.857 kb on + strand at 432.857 kb on + strand at 432.857 kb on + strand at 432.858 kb on - strand at 433.039 kb on + strand, within SM_b20419 at 433.057 kb on + strand, within SM_b20419 at 433.057 kb on + strand, within SM_b20419 at 433.090 kb on + strand, within SM_b20419 at 433.115 kb on + strand, within SM_b20419 at 433.132 kb on + strand, within SM_b20419 at 433.133 kb on - strand, within SM_b20419 at 433.389 kb on - strand, within SM_b20419 at 433.389 kb on - strand, within SM_b20419 at 433.389 kb on - strand, within SM_b20419 at 433.389 kb on - strand, within SM_b20419 at 433.642 kb on + strand, within SM_b20419 at 433.643 kb on - strand, within SM_b20419 at 433.727 kb on + strand, within SM_b20419 at 433.727 kb on + strand, within SM_b20419 at 433.728 kb on - strand, within SM_b20419 at 433.868 kb on + strand at 434.003 kb on - strand at 434.003 kb on - strand at 434.003 kb on - strand at 434.004 kb on + strand at 434.011 kb on + strand at 434.089 kb on + strand, within SM_b20420 at 434.090 kb on - strand, within SM_b20420 at 434.090 kb on - strand, within SM_b20420 at 434.202 kb on + strand, within SM_b20420 at 434.202 kb on + strand, within SM_b20420 at 434.203 kb on - strand, within SM_b20420 at 434.203 kb on - strand, within SM_b20420 at 434.217 kb on + strand, within SM_b20420 at 434.234 kb on + strand, within SM_b20420 at 434.234 kb on + strand, within SM_b20420 at 434.235 kb on - strand, within SM_b20420 at 434.268 kb on + strand, within SM_b20420 at 434.268 kb on + strand, within SM_b20420 at 434.268 kb on + strand, within SM_b20420 at 434.458 kb on + strand, within SM_b20420 at 434.459 kb on - strand, within SM_b20420 at 434.459 kb on - strand, within SM_b20420 at 434.459 kb on - strand, within SM_b20420 at 434.462 kb on + strand, within SM_b20420 at 434.462 kb on + strand, within SM_b20420 at 434.484 kb on + strand, within SM_b20420 at 434.485 kb on - strand at 434.538 kb on - strand, within SM_b20420 at 434.544 kb on + strand, within SM_b20420 at 434.559 kb on + strand at 434.559 kb on + strand at 434.560 kb on - strand at 434.560 kb on - strand at 434.560 kb on - strand at 434.560 kb on - strand at 434.617 kb on - strand at 434.703 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 431,828 - SM_b20417 0.84 +0.3 431,828 - SM_b20417 0.84 -1.2 431,836 + SM_b20417 0.85 -0.8 431,836 + SM_b20417 0.85 +1.2 431,836 + SM_b20417 0.85 -0.6 431,837 - SM_b20417 0.85 -0.3 431,837 - SM_b20417 0.85 -0.6 431,838 + SM_b20417 0.86 -2.6 431,838 + SM_b20417 0.86 +0.2 431,957 - -1.6 432,001 + -1.2 432,054 + +1.1 432,054 + -0.2 432,054 + +0.1 432,054 + -0.1 432,055 - -0.4 432,055 - +2.3 432,057 + -0.7 432,057 + -0.7 432,058 - SM_b20418 0.10 -1.1 432,060 - SM_b20418 0.10 -0.5 432,108 - SM_b20418 0.16 +0.7 432,145 - SM_b20418 0.20 -0.1 432,373 - SM_b20418 0.47 +2.3 432,373 - SM_b20418 0.47 +0.9 432,409 - SM_b20418 0.51 -1.9 432,409 - SM_b20418 0.51 -1.4 432,409 - SM_b20418 0.51 -1.1 432,572 + SM_b20418 0.71 -0.7 432,603 + SM_b20418 0.74 -2.9 432,604 - SM_b20418 0.74 -0.5 432,618 + SM_b20418 0.76 +0.7 432,619 - SM_b20418 0.76 -0.1 432,720 + SM_b20418 0.88 -0.8 432,720 + SM_b20418 0.88 -1.3 432,720 + SM_b20418 0.88 -2.1 432,721 - SM_b20418 0.88 +0.1 432,721 - SM_b20418 0.88 +1.0 432,819 + -0.4 432,820 - -0.5 432,857 + -1.0 432,857 + +0.6 432,857 + -1.8 432,858 - -0.3 433,039 + SM_b20419 0.21 -0.0 433,057 + SM_b20419 0.22 -1.7 433,057 + SM_b20419 0.22 -2.3 433,090 + SM_b20419 0.26 -0.3 433,115 + SM_b20419 0.28 -1.5 433,132 + SM_b20419 0.30 -0.7 433,133 - SM_b20419 0.30 +0.9 433,389 - SM_b20419 0.54 +0.6 433,389 - SM_b20419 0.54 +1.2 433,389 - SM_b20419 0.54 +0.1 433,389 - SM_b20419 0.54 -0.9 433,642 + SM_b20419 0.78 -1.1 433,643 - SM_b20419 0.78 -0.4 433,727 + SM_b20419 0.86 -0.3 433,727 + SM_b20419 0.86 -0.4 433,728 - SM_b20419 0.86 -0.8 433,868 + -0.0 434,003 - +0.5 434,003 - +0.7 434,003 - +0.7 434,004 + -1.0 434,011 + +0.2 434,089 + SM_b20420 0.15 +1.2 434,090 - SM_b20420 0.16 -0.8 434,090 - SM_b20420 0.16 +0.8 434,202 + SM_b20420 0.33 -1.7 434,202 + SM_b20420 0.33 +0.6 434,203 - SM_b20420 0.34 +0.8 434,203 - SM_b20420 0.34 -2.1 434,217 + SM_b20420 0.36 -1.2 434,234 + SM_b20420 0.39 +1.1 434,234 + SM_b20420 0.39 -0.6 434,235 - SM_b20420 0.39 +0.2 434,268 + SM_b20420 0.44 -0.7 434,268 + SM_b20420 0.44 -0.8 434,268 + SM_b20420 0.44 -0.0 434,458 + SM_b20420 0.74 -0.3 434,459 - SM_b20420 0.74 -1.0 434,459 - SM_b20420 0.74 -0.3 434,459 - SM_b20420 0.74 -2.2 434,462 + SM_b20420 0.75 -1.9 434,462 + SM_b20420 0.75 -2.0 434,484 + SM_b20420 0.78 +0.8 434,485 - -0.2 434,538 - SM_b20420 0.87 +0.2 434,544 + SM_b20420 0.88 -0.3 434,559 + +0.7 434,559 + -0.3 434,560 - +0.3 434,560 - -0.5 434,560 - -0.2 434,560 - +0.2 434,617 - +0.9 434,703 - +0.1
Or see this region's nucleotide sequence