Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20383 and SM_b20384 are separated by 105 nucleotides SM_b20384 and SM_b20385 are separated by 13 nucleotides SM_b20385 and SM_b20386 overlap by 4 nucleotides
SM_b20383: SM_b20383 - ABC transporter substrate-binding protein, at 394,240 to 395,313
_b20383
SM_b20384: SM_b20384 - dipeptidase, at 395,419 to 396,390
_b20384
SM_b20385: SM_b20385 - hypothetical protein, at 396,404 to 397,132
_b20385
SM_b20386: SM_b20386 - hypothetical protein, at 397,129 to 398,865
_b20386
Position (kb) 395
396
397 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 394.563 kb on + strand, within SM_b20383 at 394.564 kb on - strand, within SM_b20383 at 394.722 kb on - strand, within SM_b20383 at 394.722 kb on - strand, within SM_b20383 at 394.877 kb on + strand, within SM_b20383 at 394.878 kb on - strand, within SM_b20383 at 394.878 kb on - strand, within SM_b20383 at 395.104 kb on + strand, within SM_b20383 at 395.105 kb on - strand, within SM_b20383 at 395.219 kb on + strand at 395.219 kb on + strand at 395.352 kb on + strand at 395.352 kb on + strand at 395.352 kb on + strand at 395.353 kb on - strand at 395.353 kb on - strand at 395.531 kb on - strand, within SM_b20384 at 395.531 kb on - strand, within SM_b20384 at 395.601 kb on - strand, within SM_b20384 at 395.601 kb on - strand, within SM_b20384 at 395.771 kb on - strand, within SM_b20384 at 395.844 kb on + strand, within SM_b20384 at 395.850 kb on + strand, within SM_b20384 at 396.146 kb on + strand, within SM_b20384 at 396.321 kb on - strand at 396.544 kb on - strand, within SM_b20385 at 396.996 kb on + strand, within SM_b20385 at 396.996 kb on + strand at 397.052 kb on + strand, within SM_b20385 at 397.052 kb on + strand, within SM_b20385 at 397.052 kb on + strand, within SM_b20385 at 397.053 kb on - strand, within SM_b20385 at 397.132 kb on + strand at 397.151 kb on + strand at 397.151 kb on + strand at 397.152 kb on - strand at 397.152 kb on - strand at 397.152 kb on - strand at 397.152 kb on - strand at 397.293 kb on + strand at 397.293 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 394,563 + SM_b20383 0.30 -1.9 394,564 - SM_b20383 0.30 -0.3 394,722 - SM_b20383 0.45 -0.1 394,722 - SM_b20383 0.45 -0.5 394,877 + SM_b20383 0.59 -0.1 394,878 - SM_b20383 0.59 -1.7 394,878 - SM_b20383 0.59 -2.7 395,104 + SM_b20383 0.80 +1.1 395,105 - SM_b20383 0.81 +0.2 395,219 + +0.4 395,219 + -0.5 395,352 + +0.7 395,352 + -0.0 395,352 + -0.0 395,353 - -2.8 395,353 - +0.6 395,531 - SM_b20384 0.12 +1.1 395,531 - SM_b20384 0.12 -1.1 395,601 - SM_b20384 0.19 +1.4 395,601 - SM_b20384 0.19 +0.4 395,771 - SM_b20384 0.36 +0.8 395,844 + SM_b20384 0.44 -0.4 395,850 + SM_b20384 0.44 -0.1 396,146 + SM_b20384 0.75 +1.2 396,321 - -0.5 396,544 - SM_b20385 0.19 -0.2 396,996 + SM_b20385 0.81 -0.7 396,996 + +1.8 397,052 + SM_b20385 0.89 -1.3 397,052 + SM_b20385 0.89 -3.1 397,052 + SM_b20385 0.89 -1.2 397,053 - SM_b20385 0.89 +0.4 397,132 + -2.4 397,151 + -0.6 397,151 + -0.7 397,152 - -0.3 397,152 - +0.5 397,152 - +1.2 397,152 - -0.4 397,293 + +0.4 397,293 + +1.4
Or see this region's nucleotide sequence