Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20381 and SM_b20382 overlap by 4 nucleotides SM_b20382 and SM_b20383 are separated by 125 nucleotides SM_b20383 and SM_b20384 are separated by 105 nucleotides
SM_b20381: SM_b20381 - ABC transporter permease, at 392,436 to 393,266
_b20381
SM_b20382: SM_b20382 - ABC transporter permease, at 393,263 to 394,114
_b20382
SM_b20383: SM_b20383 - ABC transporter substrate-binding protein, at 394,240 to 395,313
_b20383
SM_b20384: SM_b20384 - dipeptidase, at 395,419 to 396,390
_b20384
Position (kb) 394
395
396 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 393.312 kb on + strand at 393.312 kb on + strand at 393.313 kb on - strand at 393.313 kb on - strand at 393.313 kb on - strand at 393.404 kb on + strand, within SM_b20382 at 393.404 kb on + strand, within SM_b20382 at 393.405 kb on - strand, within SM_b20382 at 393.459 kb on + strand, within SM_b20382 at 393.459 kb on + strand, within SM_b20382 at 393.459 kb on + strand, within SM_b20382 at 393.459 kb on + strand, within SM_b20382 at 393.460 kb on - strand, within SM_b20382 at 393.460 kb on - strand, within SM_b20382 at 393.528 kb on + strand, within SM_b20382 at 393.585 kb on + strand at 393.585 kb on + strand, within SM_b20382 at 393.585 kb on + strand, within SM_b20382 at 393.586 kb on - strand, within SM_b20382 at 393.586 kb on - strand, within SM_b20382 at 393.641 kb on - strand, within SM_b20382 at 393.768 kb on + strand, within SM_b20382 at 393.769 kb on - strand, within SM_b20382 at 393.769 kb on - strand, within SM_b20382 at 393.783 kb on + strand, within SM_b20382 at 393.784 kb on - strand, within SM_b20382 at 393.924 kb on + strand, within SM_b20382 at 393.924 kb on + strand, within SM_b20382 at 393.924 kb on + strand, within SM_b20382 at 393.924 kb on + strand, within SM_b20382 at 394.014 kb on + strand, within SM_b20382 at 394.015 kb on - strand, within SM_b20382 at 394.196 kb on + strand at 394.241 kb on + strand at 394.241 kb on + strand at 394.563 kb on + strand, within SM_b20383 at 394.564 kb on - strand, within SM_b20383 at 394.722 kb on - strand, within SM_b20383 at 394.722 kb on - strand, within SM_b20383 at 394.877 kb on + strand, within SM_b20383 at 394.878 kb on - strand, within SM_b20383 at 394.878 kb on - strand, within SM_b20383 at 395.104 kb on + strand, within SM_b20383 at 395.105 kb on - strand, within SM_b20383 at 395.219 kb on + strand at 395.219 kb on + strand at 395.352 kb on + strand at 395.352 kb on + strand at 395.352 kb on + strand at 395.353 kb on - strand at 395.353 kb on - strand at 395.531 kb on - strand, within SM_b20384 at 395.531 kb on - strand, within SM_b20384 at 395.601 kb on - strand, within SM_b20384 at 395.601 kb on - strand, within SM_b20384 at 395.771 kb on - strand, within SM_b20384 at 395.844 kb on + strand, within SM_b20384 at 395.850 kb on + strand, within SM_b20384 at 396.146 kb on + strand, within SM_b20384
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 393,312 + +0.0 393,312 + -0.1 393,313 - -1.7 393,313 - +0.0 393,313 - +0.1 393,404 + SM_b20382 0.17 -0.2 393,404 + SM_b20382 0.17 -0.4 393,405 - SM_b20382 0.17 -2.0 393,459 + SM_b20382 0.23 -0.1 393,459 + SM_b20382 0.23 -2.3 393,459 + SM_b20382 0.23 +0.1 393,459 + SM_b20382 0.23 -0.6 393,460 - SM_b20382 0.23 -0.1 393,460 - SM_b20382 0.23 +1.8 393,528 + SM_b20382 0.31 -2.1 393,585 + -0.2 393,585 + SM_b20382 0.38 +0.7 393,585 + SM_b20382 0.38 -0.9 393,586 - SM_b20382 0.38 -0.2 393,586 - SM_b20382 0.38 -0.5 393,641 - SM_b20382 0.44 -0.6 393,768 + SM_b20382 0.59 +0.1 393,769 - SM_b20382 0.59 -2.2 393,769 - SM_b20382 0.59 -0.6 393,783 + SM_b20382 0.61 +0.6 393,784 - SM_b20382 0.61 -2.9 393,924 + SM_b20382 0.78 -0.0 393,924 + SM_b20382 0.78 -0.4 393,924 + SM_b20382 0.78 +0.4 393,924 + SM_b20382 0.78 -0.2 394,014 + SM_b20382 0.88 -1.8 394,015 - SM_b20382 0.88 -0.5 394,196 + -1.1 394,241 + -0.2 394,241 + -0.6 394,563 + SM_b20383 0.30 -1.9 394,564 - SM_b20383 0.30 -0.3 394,722 - SM_b20383 0.45 -0.1 394,722 - SM_b20383 0.45 -0.5 394,877 + SM_b20383 0.59 -0.1 394,878 - SM_b20383 0.59 -1.7 394,878 - SM_b20383 0.59 -2.7 395,104 + SM_b20383 0.80 +1.1 395,105 - SM_b20383 0.81 +0.2 395,219 + +0.4 395,219 + -0.5 395,352 + +0.7 395,352 + -0.0 395,352 + -0.0 395,353 - -2.8 395,353 - +0.6 395,531 - SM_b20384 0.12 +1.1 395,531 - SM_b20384 0.12 -1.1 395,601 - SM_b20384 0.19 +1.4 395,601 - SM_b20384 0.19 +0.4 395,771 - SM_b20384 0.36 +0.8 395,844 + SM_b20384 0.44 -0.4 395,850 + SM_b20384 0.44 -0.1 396,146 + SM_b20384 0.75 +1.2
Or see this region's nucleotide sequence