Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20351 and SM_b20352 overlap by 1 nucleotides SM_b20352 and SM_b20353 are separated by 5 nucleotides
SM_b20351: SM_b20351 - sugar ABC transporter ATP-binding protein, at 358,212 to 359,762
_b20351
SM_b20352: SM_b20352 - sugar ABC transporter permease, at 359,762 to 360,826
_b20352
SM_b20353: SM_b20353 - oxidoreductase, at 360,832 to 361,866
_b20353
Position (kb) 359
360
361 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 358.821 kb on + strand, within SM_b20351 at 358.822 kb on - strand, within SM_b20351 at 358.863 kb on + strand, within SM_b20351 at 358.863 kb on + strand, within SM_b20351 at 358.864 kb on - strand, within SM_b20351 at 358.864 kb on - strand, within SM_b20351 at 358.864 kb on - strand, within SM_b20351 at 358.922 kb on + strand, within SM_b20351 at 359.078 kb on - strand, within SM_b20351 at 359.078 kb on - strand, within SM_b20351 at 359.103 kb on + strand, within SM_b20351 at 359.103 kb on + strand, within SM_b20351 at 359.104 kb on - strand, within SM_b20351 at 359.104 kb on - strand, within SM_b20351 at 359.248 kb on + strand, within SM_b20351 at 359.249 kb on - strand, within SM_b20351 at 359.348 kb on + strand, within SM_b20351 at 359.348 kb on + strand, within SM_b20351 at 359.349 kb on - strand, within SM_b20351 at 359.349 kb on - strand, within SM_b20351 at 359.530 kb on + strand, within SM_b20351 at 359.531 kb on - strand, within SM_b20351 at 359.531 kb on - strand, within SM_b20351 at 359.531 kb on - strand, within SM_b20351 at 359.717 kb on - strand at 359.738 kb on + strand at 359.738 kb on + strand at 359.815 kb on - strand at 359.914 kb on - strand, within SM_b20352 at 359.914 kb on - strand, within SM_b20352 at 360.087 kb on - strand, within SM_b20352 at 360.163 kb on + strand, within SM_b20352 at 360.377 kb on + strand, within SM_b20352 at 360.390 kb on - strand, within SM_b20352 at 360.392 kb on - strand, within SM_b20352 at 360.392 kb on - strand, within SM_b20352 at 360.392 kb on - strand, within SM_b20352 at 360.486 kb on - strand, within SM_b20352 at 360.486 kb on - strand, within SM_b20352 at 360.486 kb on - strand, within SM_b20352 at 360.992 kb on - strand, within SM_b20353 at 361.233 kb on - strand, within SM_b20353 at 361.284 kb on - strand, within SM_b20353 at 361.390 kb on + strand, within SM_b20353 at 361.519 kb on + strand, within SM_b20353 at 361.520 kb on - strand, within SM_b20353 at 361.636 kb on - strand, within SM_b20353 at 361.764 kb on + strand at 361.813 kb on + strand at 361.814 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 358,821 + SM_b20351 0.39 -1.4 358,822 - SM_b20351 0.39 -0.1 358,863 + SM_b20351 0.42 -0.5 358,863 + SM_b20351 0.42 +0.1 358,864 - SM_b20351 0.42 -1.8 358,864 - SM_b20351 0.42 -0.2 358,864 - SM_b20351 0.42 -1.5 358,922 + SM_b20351 0.46 +0.4 359,078 - SM_b20351 0.56 +0.8 359,078 - SM_b20351 0.56 -0.8 359,103 + SM_b20351 0.57 +0.3 359,103 + SM_b20351 0.57 -0.0 359,104 - SM_b20351 0.58 -0.7 359,104 - SM_b20351 0.58 -0.2 359,248 + SM_b20351 0.67 +0.1 359,249 - SM_b20351 0.67 +0.1 359,348 + SM_b20351 0.73 -0.2 359,348 + SM_b20351 0.73 +0.6 359,349 - SM_b20351 0.73 +2.0 359,349 - SM_b20351 0.73 -2.4 359,530 + SM_b20351 0.85 +0.6 359,531 - SM_b20351 0.85 -3.0 359,531 - SM_b20351 0.85 +0.1 359,531 - SM_b20351 0.85 +0.8 359,717 - -1.0 359,738 + +0.0 359,738 + -0.8 359,815 - +1.3 359,914 - SM_b20352 0.14 -0.6 359,914 - SM_b20352 0.14 -2.7 360,087 - SM_b20352 0.31 -0.4 360,163 + SM_b20352 0.38 -0.2 360,377 + SM_b20352 0.58 +1.4 360,390 - SM_b20352 0.59 -1.0 360,392 - SM_b20352 0.59 +0.4 360,392 - SM_b20352 0.59 -0.7 360,392 - SM_b20352 0.59 -0.9 360,486 - SM_b20352 0.68 +0.2 360,486 - SM_b20352 0.68 -0.3 360,486 - SM_b20352 0.68 -0.2 360,992 - SM_b20353 0.15 +0.8 361,233 - SM_b20353 0.39 -1.4 361,284 - SM_b20353 0.44 -0.5 361,390 + SM_b20353 0.54 -0.8 361,519 + SM_b20353 0.66 +3.4 361,520 - SM_b20353 0.66 +0.4 361,636 - SM_b20353 0.78 +0.0 361,764 + +0.2 361,813 + -1.3 361,814 - -1.0
Or see this region's nucleotide sequence