Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20346 and SM_b20347 are separated by 92 nucleotides SM_b20347 and SM_b20348 are separated by 186 nucleotides
SM_b20346: SM_b20346 - efflux protein, at 353,526 to 354,680
_b20346
SM_b20347: SM_b20347 - transcriptional regulator, at 354,773 to 355,381
_b20347
SM_b20348: SM_b20348 - hypothetical protein, at 355,568 to 356,395
_b20348
Position (kb) 354
355
356 Strain fitness (log2 ratio) -2
-1
0
1
2 at 354.012 kb on - strand, within SM_b20346 at 354.018 kb on + strand, within SM_b20346 at 354.018 kb on + strand, within SM_b20346 at 354.019 kb on - strand, within SM_b20346 at 354.019 kb on - strand, within SM_b20346 at 354.114 kb on + strand, within SM_b20346 at 354.114 kb on + strand, within SM_b20346 at 354.155 kb on + strand, within SM_b20346 at 354.157 kb on + strand, within SM_b20346 at 354.157 kb on + strand, within SM_b20346 at 354.157 kb on + strand, within SM_b20346 at 354.158 kb on - strand, within SM_b20346 at 354.162 kb on + strand, within SM_b20346 at 354.163 kb on - strand, within SM_b20346 at 354.413 kb on + strand, within SM_b20346 at 354.414 kb on - strand, within SM_b20346 at 354.414 kb on - strand, within SM_b20346 at 354.509 kb on - strand, within SM_b20346 at 354.564 kb on + strand, within SM_b20346 at 354.565 kb on - strand at 354.687 kb on + strand at 354.989 kb on - strand, within SM_b20347 at 354.989 kb on - strand, within SM_b20347 at 354.989 kb on - strand, within SM_b20347 at 355.224 kb on + strand, within SM_b20347 at 355.285 kb on - strand, within SM_b20347 at 355.290 kb on + strand, within SM_b20347 at 355.480 kb on - strand at 355.480 kb on - strand at 355.480 kb on - strand at 355.551 kb on + strand at 355.552 kb on - strand at 355.808 kb on - strand, within SM_b20348 at 355.808 kb on - strand, within SM_b20348 at 355.856 kb on + strand, within SM_b20348 at 355.856 kb on + strand, within SM_b20348 at 355.888 kb on + strand, within SM_b20348 at 355.888 kb on + strand, within SM_b20348 at 355.889 kb on - strand, within SM_b20348 at 355.889 kb on - strand, within SM_b20348 at 355.892 kb on + strand, within SM_b20348 at 355.893 kb on - strand, within SM_b20348 at 356.028 kb on - strand, within SM_b20348 at 356.028 kb on - strand, within SM_b20348 at 356.028 kb on - strand at 356.028 kb on - strand, within SM_b20348
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 354,012 - SM_b20346 0.42 +1.3 354,018 + SM_b20346 0.43 +0.5 354,018 + SM_b20346 0.43 +0.3 354,019 - SM_b20346 0.43 +1.3 354,019 - SM_b20346 0.43 +0.9 354,114 + SM_b20346 0.51 +1.1 354,114 + SM_b20346 0.51 +1.1 354,155 + SM_b20346 0.54 +2.0 354,157 + SM_b20346 0.55 +1.0 354,157 + SM_b20346 0.55 +0.9 354,157 + SM_b20346 0.55 +1.2 354,158 - SM_b20346 0.55 +1.2 354,162 + SM_b20346 0.55 +1.1 354,163 - SM_b20346 0.55 +2.1 354,413 + SM_b20346 0.77 +1.2 354,414 - SM_b20346 0.77 +1.2 354,414 - SM_b20346 0.77 +1.8 354,509 - SM_b20346 0.85 +1.4 354,564 + SM_b20346 0.90 +0.4 354,565 - +0.6 354,687 + +1.2 354,989 - SM_b20347 0.35 -2.3 354,989 - SM_b20347 0.35 +0.5 354,989 - SM_b20347 0.35 -0.9 355,224 + SM_b20347 0.74 +2.4 355,285 - SM_b20347 0.84 +0.5 355,290 + SM_b20347 0.85 +0.6 355,480 - +0.1 355,480 - -0.6 355,480 - +1.0 355,551 + +0.8 355,552 - -0.5 355,808 - SM_b20348 0.29 +0.5 355,808 - SM_b20348 0.29 +0.6 355,856 + SM_b20348 0.35 +0.2 355,856 + SM_b20348 0.35 -1.6 355,888 + SM_b20348 0.39 +0.3 355,888 + SM_b20348 0.39 -1.0 355,889 - SM_b20348 0.39 -0.2 355,889 - SM_b20348 0.39 -0.7 355,892 + SM_b20348 0.39 -1.5 355,893 - SM_b20348 0.39 -0.1 356,028 - SM_b20348 0.56 +0.4 356,028 - SM_b20348 0.56 +1.8 356,028 - +2.0 356,028 - SM_b20348 0.56 -1.8
Or see this region's nucleotide sequence