Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20332 and SM_b20333 are separated by 143 nucleotides SM_b20333 and SM_b20334 are separated by 615 nucleotides
SM_b20332: SM_b20332 - hypothetical protein, at 335,644 to 336,585
_b20332
SM_b20333: SM_b20333 - transporter protein, at 336,729 to 338,849
_b20333
SM_b20334: SM_b20334 - hypothetical protein, at 339,465 to 340,376
_b20334
Position (kb) 336
337
338
339 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 335.747 kb on + strand, within SM_b20332 at 335.747 kb on + strand, within SM_b20332 at 335.795 kb on - strand, within SM_b20332 at 335.887 kb on + strand, within SM_b20332 at 335.888 kb on - strand, within SM_b20332 at 335.920 kb on + strand, within SM_b20332 at 335.920 kb on + strand, within SM_b20332 at 335.920 kb on + strand, within SM_b20332 at 335.921 kb on - strand, within SM_b20332 at 335.921 kb on - strand, within SM_b20332 at 335.921 kb on - strand, within SM_b20332 at 336.148 kb on + strand, within SM_b20332 at 336.202 kb on + strand, within SM_b20332 at 336.206 kb on - strand, within SM_b20332 at 336.206 kb on - strand, within SM_b20332 at 336.206 kb on - strand, within SM_b20332 at 336.469 kb on + strand, within SM_b20332 at 336.469 kb on + strand, within SM_b20332 at 336.470 kb on - strand, within SM_b20332 at 336.508 kb on + strand at 336.509 kb on - strand at 336.509 kb on - strand at 336.510 kb on + strand at 336.510 kb on + strand at 336.510 kb on + strand at 336.510 kb on + strand at 336.510 kb on + strand at 336.511 kb on - strand at 336.511 kb on - strand at 336.618 kb on + strand at 336.618 kb on + strand at 336.654 kb on - strand at 336.665 kb on - strand at 336.671 kb on - strand at 336.691 kb on + strand at 336.730 kb on + strand at 336.730 kb on + strand at 336.731 kb on - strand at 336.777 kb on + strand at 336.790 kb on + strand at 336.919 kb on - strand at 336.964 kb on + strand, within SM_b20333 at 336.965 kb on - strand, within SM_b20333 at 337.473 kb on + strand, within SM_b20333 at 337.473 kb on + strand, within SM_b20333 at 337.473 kb on + strand, within SM_b20333 at 337.526 kb on - strand, within SM_b20333 at 337.609 kb on + strand, within SM_b20333 at 337.609 kb on + strand, within SM_b20333 at 337.609 kb on + strand, within SM_b20333 at 337.610 kb on - strand, within SM_b20333 at 337.610 kb on - strand, within SM_b20333 at 337.765 kb on + strand, within SM_b20333 at 337.765 kb on + strand, within SM_b20333 at 337.805 kb on - strand, within SM_b20333 at 337.810 kb on + strand, within SM_b20333 at 337.810 kb on + strand, within SM_b20333 at 337.810 kb on + strand, within SM_b20333 at 337.811 kb on - strand, within SM_b20333 at 337.811 kb on - strand, within SM_b20333 at 337.811 kb on - strand, within SM_b20333 at 337.846 kb on + strand, within SM_b20333 at 337.847 kb on - strand, within SM_b20333 at 337.923 kb on + strand, within SM_b20333 at 337.924 kb on - strand, within SM_b20333 at 337.924 kb on - strand, within SM_b20333 at 337.992 kb on - strand, within SM_b20333 at 337.992 kb on - strand, within SM_b20333 at 338.035 kb on + strand, within SM_b20333 at 338.062 kb on + strand, within SM_b20333 at 338.062 kb on + strand, within SM_b20333 at 338.063 kb on - strand, within SM_b20333 at 338.063 kb on - strand, within SM_b20333 at 338.063 kb on - strand, within SM_b20333 at 338.142 kb on + strand, within SM_b20333 at 338.142 kb on + strand, within SM_b20333 at 338.143 kb on - strand, within SM_b20333 at 338.144 kb on + strand, within SM_b20333 at 338.194 kb on + strand, within SM_b20333 at 338.221 kb on - strand, within SM_b20333 at 338.227 kb on + strand, within SM_b20333 at 338.242 kb on + strand, within SM_b20333 at 338.269 kb on + strand, within SM_b20333 at 338.269 kb on + strand, within SM_b20333 at 338.269 kb on + strand, within SM_b20333 at 338.270 kb on - strand, within SM_b20333 at 338.270 kb on - strand, within SM_b20333 at 338.270 kb on - strand, within SM_b20333 at 338.271 kb on + strand, within SM_b20333 at 338.271 kb on + strand, within SM_b20333 at 338.272 kb on - strand, within SM_b20333 at 338.272 kb on - strand, within SM_b20333 at 338.307 kb on + strand, within SM_b20333 at 338.452 kb on + strand, within SM_b20333 at 338.452 kb on + strand, within SM_b20333 at 338.452 kb on + strand, within SM_b20333 at 338.453 kb on - strand, within SM_b20333 at 338.453 kb on - strand, within SM_b20333 at 338.521 kb on - strand, within SM_b20333 at 338.521 kb on - strand, within SM_b20333 at 338.558 kb on - strand, within SM_b20333 at 338.638 kb on - strand at 338.679 kb on + strand at 338.792 kb on + strand at 338.795 kb on + strand at 339.033 kb on + strand at 339.085 kb on + strand at 339.226 kb on + strand at 339.259 kb on + strand at 339.259 kb on + strand at 339.280 kb on + strand at 339.281 kb on - strand at 339.284 kb on - strand at 339.284 kb on - strand at 339.284 kb on - strand at 339.683 kb on - strand, within SM_b20334 at 339.737 kb on + strand, within SM_b20334 at 339.737 kb on + strand, within SM_b20334 at 339.738 kb on - strand, within SM_b20334 at 339.738 kb on - strand, within SM_b20334 at 339.739 kb on + strand, within SM_b20334 at 339.739 kb on + strand, within SM_b20334 at 339.740 kb on - strand, within SM_b20334 at 339.740 kb on - strand, within SM_b20334 at 339.755 kb on - strand, within SM_b20334 at 339.843 kb on + strand, within SM_b20334 at 339.844 kb on - strand, within SM_b20334
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 335,747 + SM_b20332 0.11 -0.4 335,747 + SM_b20332 0.11 -0.0 335,795 - SM_b20332 0.16 -0.8 335,887 + SM_b20332 0.26 +1.0 335,888 - SM_b20332 0.26 -0.4 335,920 + SM_b20332 0.29 -1.0 335,920 + SM_b20332 0.29 -0.4 335,920 + SM_b20332 0.29 -0.8 335,921 - SM_b20332 0.29 -1.2 335,921 - SM_b20332 0.29 +0.8 335,921 - SM_b20332 0.29 +0.3 336,148 + SM_b20332 0.54 -1.4 336,202 + SM_b20332 0.59 -0.3 336,206 - SM_b20332 0.60 +1.6 336,206 - SM_b20332 0.60 -0.8 336,206 - SM_b20332 0.60 -0.9 336,469 + SM_b20332 0.88 -0.6 336,469 + SM_b20332 0.88 -2.2 336,470 - SM_b20332 0.88 +0.6 336,508 + +1.3 336,509 - +0.0 336,509 - -0.3 336,510 + -1.9 336,510 + +0.4 336,510 + -3.7 336,510 + +0.9 336,510 + -2.3 336,511 - -1.6 336,511 - -1.8 336,618 + -1.1 336,618 + +0.2 336,654 - -1.2 336,665 - +0.0 336,671 - -0.5 336,691 + +0.5 336,730 + +0.2 336,730 + +0.9 336,731 - +2.1 336,777 + +1.2 336,790 + +1.0 336,919 - +1.4 336,964 + SM_b20333 0.11 -0.4 336,965 - SM_b20333 0.11 +0.6 337,473 + SM_b20333 0.35 +1.1 337,473 + SM_b20333 0.35 +1.0 337,473 + SM_b20333 0.35 +1.7 337,526 - SM_b20333 0.38 -1.0 337,609 + SM_b20333 0.41 +1.5 337,609 + SM_b20333 0.41 +1.7 337,609 + SM_b20333 0.41 +0.9 337,610 - SM_b20333 0.42 -0.2 337,610 - SM_b20333 0.42 +2.6 337,765 + SM_b20333 0.49 +1.0 337,765 + SM_b20333 0.49 +1.3 337,805 - SM_b20333 0.51 +2.4 337,810 + SM_b20333 0.51 +1.0 337,810 + SM_b20333 0.51 +3.4 337,810 + SM_b20333 0.51 +2.6 337,811 - SM_b20333 0.51 -2.7 337,811 - SM_b20333 0.51 +1.4 337,811 - SM_b20333 0.51 +2.6 337,846 + SM_b20333 0.53 +1.0 337,847 - SM_b20333 0.53 +1.4 337,923 + SM_b20333 0.56 +0.9 337,924 - SM_b20333 0.56 +4.1 337,924 - SM_b20333 0.56 +1.6 337,992 - SM_b20333 0.60 +1.6 337,992 - SM_b20333 0.60 +1.1 338,035 + SM_b20333 0.62 +1.5 338,062 + SM_b20333 0.63 +1.4 338,062 + SM_b20333 0.63 +1.7 338,063 - SM_b20333 0.63 +2.0 338,063 - SM_b20333 0.63 +2.1 338,063 - SM_b20333 0.63 +0.2 338,142 + SM_b20333 0.67 +0.6 338,142 + SM_b20333 0.67 +0.7 338,143 - SM_b20333 0.67 +1.3 338,144 + SM_b20333 0.67 -0.8 338,194 + SM_b20333 0.69 +0.5 338,221 - SM_b20333 0.70 +1.5 338,227 + SM_b20333 0.71 +1.8 338,242 + SM_b20333 0.71 +2.2 338,269 + SM_b20333 0.73 +0.8 338,269 + SM_b20333 0.73 +1.1 338,269 + SM_b20333 0.73 +1.8 338,270 - SM_b20333 0.73 +1.1 338,270 - SM_b20333 0.73 +1.0 338,270 - SM_b20333 0.73 +1.4 338,271 + SM_b20333 0.73 +0.8 338,271 + SM_b20333 0.73 +1.5 338,272 - SM_b20333 0.73 +2.3 338,272 - SM_b20333 0.73 +2.6 338,307 + SM_b20333 0.74 +0.6 338,452 + SM_b20333 0.81 +1.6 338,452 + SM_b20333 0.81 +1.6 338,452 + SM_b20333 0.81 +0.3 338,453 - SM_b20333 0.81 +1.5 338,453 - SM_b20333 0.81 +1.7 338,521 - SM_b20333 0.84 +1.2 338,521 - SM_b20333 0.84 +1.1 338,558 - SM_b20333 0.86 +0.8 338,638 - +2.2 338,679 + -0.3 338,792 + -2.4 338,795 + +0.4 339,033 + -2.3 339,085 + -2.2 339,226 + -0.5 339,259 + -1.2 339,259 + +0.3 339,280 + -1.2 339,281 - -0.0 339,284 - +0.3 339,284 - -1.9 339,284 - -0.9 339,683 - SM_b20334 0.24 -0.7 339,737 + SM_b20334 0.30 -0.6 339,737 + SM_b20334 0.30 +0.6 339,738 - SM_b20334 0.30 -0.2 339,738 - SM_b20334 0.30 -0.7 339,739 + SM_b20334 0.30 -0.3 339,739 + SM_b20334 0.30 -1.9 339,740 - SM_b20334 0.30 +0.3 339,740 - SM_b20334 0.30 -0.1 339,755 - SM_b20334 0.32 -2.3 339,843 + SM_b20334 0.41 +1.2 339,844 - SM_b20334 0.42 -0.6
Or see this region's nucleotide sequence