Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20320

Experiment: Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20319 and SM_b20320 are separated by 140 nucleotidesSM_b20320 and SM_b20321 are separated by 28 nucleotides SM_b20319: SM_b20319 - hypothetical protein, at 321,582 to 322,799 _b20319 SM_b20320: SM_b20320 - TRAP-type large permease component, at 322,940 to 323,935 _b20320 SM_b20321: SM_b20321 - hypothetical protein, at 323,964 to 325,229 _b20321 Position (kb) 322 323 324Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 322.371 kb on + strand, within SM_b20319at 322.372 kb on - strand, within SM_b20319at 322.372 kb on - strand, within SM_b20319at 322.376 kb on - strand, within SM_b20319at 322.479 kb on - strand, within SM_b20319at 322.479 kb on - strand, within SM_b20319at 322.479 kb on - strand, within SM_b20319at 322.563 kb on - strand, within SM_b20319at 322.627 kb on + strand, within SM_b20319at 322.645 kb on - strand, within SM_b20319at 322.698 kb on - strandat 323.008 kb on - strandat 323.008 kb on - strandat 323.379 kb on + strand, within SM_b20320at 323.405 kb on - strand, within SM_b20320at 324.184 kb on + strand, within SM_b20321at 324.355 kb on + strand, within SM_b20321at 324.415 kb on + strand, within SM_b20321at 324.416 kb on - strand, within SM_b20321at 324.603 kb on - strand, within SM_b20321at 324.603 kb on - strand, within SM_b20321at 324.643 kb on + strand, within SM_b20321at 324.649 kb on + strand, within SM_b20321at 324.649 kb on + strand, within SM_b20321at 324.650 kb on - strand, within SM_b20321at 324.688 kb on - strand, within SM_b20321at 324.728 kb on + strand, within SM_b20321at 324.728 kb on + strand, within SM_b20321at 324.729 kb on - strand, within SM_b20321at 324.753 kb on + strand, within SM_b20321at 324.761 kb on - strand, within SM_b20321at 324.844 kb on + strand, within SM_b20321at 324.844 kb on + strand, within SM_b20321at 324.915 kb on + strand, within SM_b20321

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM
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322,371 + SM_b20319 0.65 -0.7
322,372 - SM_b20319 0.65 +0.8
322,372 - SM_b20319 0.65 +0.0
322,376 - SM_b20319 0.65 -0.5
322,479 - SM_b20319 0.74 -1.1
322,479 - SM_b20319 0.74 +0.7
322,479 - SM_b20319 0.74 +0.5
322,563 - SM_b20319 0.81 -0.3
322,627 + SM_b20319 0.86 +0.6
322,645 - SM_b20319 0.87 +0.3
322,698 - -0.5
323,008 - +0.3
323,008 - -0.0
323,379 + SM_b20320 0.44 +1.4
323,405 - SM_b20320 0.47 -0.6
324,184 + SM_b20321 0.17 +0.7
324,355 + SM_b20321 0.31 -0.6
324,415 + SM_b20321 0.36 -2.3
324,416 - SM_b20321 0.36 +0.4
324,603 - SM_b20321 0.50 -2.3
324,603 - SM_b20321 0.50 -2.0
324,643 + SM_b20321 0.54 +0.2
324,649 + SM_b20321 0.54 -2.8
324,649 + SM_b20321 0.54 +1.8
324,650 - SM_b20321 0.54 +0.4
324,688 - SM_b20321 0.57 -1.1
324,728 + SM_b20321 0.60 -1.3
324,728 + SM_b20321 0.60 -0.6
324,729 - SM_b20321 0.60 -1.0
324,753 + SM_b20321 0.62 +0.3
324,761 - SM_b20321 0.63 +1.4
324,844 + SM_b20321 0.70 +0.7
324,844 + SM_b20321 0.70 +1.3
324,915 + SM_b20321 0.75 -0.9

Or see this region's nucleotide sequence