Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20178 and SM_b20179 are separated by 1 nucleotides SM_b20179 and SM_b20180 are separated by 3 nucleotides SM_b20180 and SM_b20181 are separated by 54 nucleotides
SM_b20178: SM_b20178 - hypothetical protein, at 195,575 to 196,762
_b20178
SM_b20179: SM_b20179 - hypothetical protein, at 196,764 to 197,738
_b20179
SM_b20180: SM_b20180 - hypothetical protein, at 197,742 to 198,221
_b20180
SM_b20181: SM_b20181 - ABC transporter substrate-binding protein, at 198,276 to 199,247
_b20181
Position (kb) 197
198
199 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 196.760 kb on + strand at 196.761 kb on - strand at 196.962 kb on + strand, within SM_b20179 at 196.963 kb on - strand, within SM_b20179 at 197.013 kb on + strand, within SM_b20179 at 197.014 kb on - strand at 197.016 kb on - strand, within SM_b20179 at 197.089 kb on - strand, within SM_b20179 at 197.089 kb on - strand, within SM_b20179 at 197.147 kb on - strand, within SM_b20179 at 197.147 kb on - strand, within SM_b20179 at 197.219 kb on + strand, within SM_b20179 at 197.220 kb on - strand, within SM_b20179 at 197.237 kb on + strand, within SM_b20179 at 197.237 kb on + strand, within SM_b20179 at 197.237 kb on + strand, within SM_b20179 at 197.238 kb on - strand, within SM_b20179 at 197.340 kb on + strand, within SM_b20179 at 197.341 kb on - strand, within SM_b20179 at 197.562 kb on + strand, within SM_b20179 at 197.562 kb on + strand, within SM_b20179 at 197.562 kb on + strand, within SM_b20179 at 197.948 kb on + strand, within SM_b20180 at 197.967 kb on + strand, within SM_b20180 at 197.968 kb on - strand, within SM_b20180 at 197.971 kb on - strand, within SM_b20180 at 197.971 kb on - strand, within SM_b20180 at 197.971 kb on - strand, within SM_b20180 at 198.071 kb on - strand, within SM_b20180 at 198.159 kb on + strand, within SM_b20180 at 198.159 kb on + strand, within SM_b20180 at 198.159 kb on + strand, within SM_b20180 at 198.160 kb on - strand, within SM_b20180 at 198.160 kb on - strand, within SM_b20180 at 198.160 kb on - strand, within SM_b20180 at 198.400 kb on + strand, within SM_b20181 at 198.401 kb on - strand, within SM_b20181 at 198.568 kb on - strand, within SM_b20181 at 198.568 kb on - strand, within SM_b20181 at 198.711 kb on + strand, within SM_b20181 at 198.917 kb on + strand, within SM_b20181 at 198.933 kb on + strand, within SM_b20181 at 198.933 kb on + strand, within SM_b20181 at 198.987 kb on + strand, within SM_b20181
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 196,760 + -0.6 196,761 - -2.4 196,962 + SM_b20179 0.20 +0.4 196,963 - SM_b20179 0.20 -0.5 197,013 + SM_b20179 0.26 -1.9 197,014 - -0.6 197,016 - SM_b20179 0.26 +1.7 197,089 - SM_b20179 0.33 +0.8 197,089 - SM_b20179 0.33 +0.9 197,147 - SM_b20179 0.39 +0.0 197,147 - SM_b20179 0.39 -2.1 197,219 + SM_b20179 0.47 -3.2 197,220 - SM_b20179 0.47 -0.4 197,237 + SM_b20179 0.49 -1.1 197,237 + SM_b20179 0.49 +0.1 197,237 + SM_b20179 0.49 -0.4 197,238 - SM_b20179 0.49 -1.8 197,340 + SM_b20179 0.59 +0.7 197,341 - SM_b20179 0.59 -0.9 197,562 + SM_b20179 0.82 -0.5 197,562 + SM_b20179 0.82 +0.2 197,562 + SM_b20179 0.82 +1.7 197,948 + SM_b20180 0.43 +1.0 197,967 + SM_b20180 0.47 -0.4 197,968 - SM_b20180 0.47 -0.2 197,971 - SM_b20180 0.48 -0.4 197,971 - SM_b20180 0.48 -2.6 197,971 - SM_b20180 0.48 -0.8 198,071 - SM_b20180 0.69 -2.6 198,159 + SM_b20180 0.87 -0.1 198,159 + SM_b20180 0.87 +1.4 198,159 + SM_b20180 0.87 +0.2 198,160 - SM_b20180 0.87 +1.3 198,160 - SM_b20180 0.87 -1.3 198,160 - SM_b20180 0.87 -1.3 198,400 + SM_b20181 0.13 +0.5 198,401 - SM_b20181 0.13 +1.1 198,568 - SM_b20181 0.30 -1.7 198,568 - SM_b20181 0.30 -1.3 198,711 + SM_b20181 0.45 -1.3 198,917 + SM_b20181 0.66 -0.9 198,933 + SM_b20181 0.68 -0.8 198,933 + SM_b20181 0.68 -1.5 198,987 + SM_b20181 0.73 +1.3
Or see this region's nucleotide sequence